Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30756
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0029 - 16610182-16611753 34 0.10
01_05_0091 + 18048595-18050559 31 1.2
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 30 1.6
08_02_0941 + 22829689-22830012,22830077-22830460 30 1.6
05_06_0186 - 26207298-26208548,26208743-26208853,26209286-262095... 29 3.8
03_01_0452 - 3465140-3466404,3466481-3467056,3467150-3467495 29 3.8
07_03_1555 - 27669981-27670148,27670232-27670315,27670349-276703... 28 6.6
06_02_0225 + 13257655-13260693 28 6.6
08_01_0411 + 3670758-3672365 28 8.7
>03_04_0029 - 16610182-16611753
Length = 523
Score = 34.3 bits (75), Expect = 0.10
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 589 GALGSLVEDRHQRIRADGVHAEGRWLPA--GPDTAEPQRVDAC 711
G L S D + R+ A G+ A RWLPA GP A RV C
Sbjct: 160 GELESFSGDANHRLAAHGLRALARWLPAAVGPAAAAAVRVPPC 202
>01_05_0091 + 18048595-18050559
Length = 654
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 581 KLKELLARWSKIVTKESEPTVFTLKEDGSLPDLILLNHNVSML 709
++KEL+ +++ E P +E SLPD ++LN N++ L
Sbjct: 363 RVKELVKNMQTVLSHEIGPVSLNAQEKVSLPDDLVLNENLAEL 405
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +3
Query: 375 FDNPKVVEKFDMVLKAWMGAGASGVRLNNARHLLVELLEE 494
+D+P+V EKF L+AW+ AGAS + R +L ++++
Sbjct: 210 YDSPRVKEKFH--LRAWVPAGASPETSSGMRGILRAVIQK 247
>08_02_0941 + 22829689-22830012,22830077-22830460
Length = 235
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +1
Query: 589 GALGSLVEDRHQRIRADGVHAEGRWLPAGPDTAEPQRVDA--CG 714
G L S D + + A G+ A RWLPA TA V A CG
Sbjct: 70 GELESFSGDANHFLAAHGLRALARWLPAAVGTAAAAAVQASTCG 113
>05_06_0186 -
26207298-26208548,26208743-26208853,26209286-26209507,
26209623-26209658
Length = 539
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Frame = -3
Query: 605 SEPRAP*ASAGRWC----ACAPRSRTACDPRPRYCRADARLLLKQFDEQVTRVIQSDSTS 438
S PR P + C AC P S A R R+D L+ Q DE V ++ S S
Sbjct: 42 SRPRKPAPTPAAACRPATACPPASDAAAIDRLLLARSDLAGLVSQIDELVCAALECQSVS 101
>03_01_0452 - 3465140-3466404,3466481-3467056,3467150-3467495
Length = 728
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 432 HPSRPSGPCRTSQQL*DYRS*DQRSCHRTDAGRTSDV 322
HP SG +SQQ+ + +S D SC D GR S +
Sbjct: 628 HPEHWSGEPVSSQQIDENQSVDSGSCSHLDDGRISSM 664
>07_03_1555 - 27669981-27670148,27670232-27670315,27670349-27670360,
27670683-27670761,27670840-27671078,27671167-27671260,
27671342-27671484,27671688-27671786,27671870-27671998,
27672123-27672197,27672308-27672520,27672581-27672676,
27673282-27673380,27673600-27673839,27674212-27674322,
27674429-27674626,27674720-27674835,27675076-27675193,
27675761-27675866,27675972-27676030,27676259-27676388,
27676730-27676887,27677672-27677887,27677972-27678082,
27678313-27678472,27679364-27679509,27679603-27679695,
27680610-27680706,27681224-27681294,27681407-27681505,
27682037-27682168,27682287-27682729,27683252-27683564,
27684301-27684549
Length = 1631
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = +3
Query: 285 SKINTPAFTRSDKRQMFYLHQFCDNCADLNFDNPKVVEKFDMVLKAWMGAGASGVRLNNA 464
SK P + ++ + DL+ NPK +V +A +G ASGV NA
Sbjct: 1092 SKPGVPLISPPPHHDIYSIEDLAQLIYDLHQINPKAKVSVKLVAEAGIGTVASGVSKGNA 1151
>06_02_0225 + 13257655-13260693
Length = 1012
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 571 RPAEAQGALGSLVEDRHQRIRADGVHAEGRWLPAGPDTAE 690
R +A G +L + ADG H G WL PD A+
Sbjct: 374 RDKQAAGDADALASVKAATWMADGTHWPGTWLDPSPDHAK 413
>08_01_0411 + 3670758-3672365
Length = 535
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 729 AAERRPASIDTLWFSSIRSGREPSSFSVNTV 637
A + RP L+ SS+RSGR P F++ V
Sbjct: 20 ADQGRPRRAVALYLSSLRSGRRPCPFALAAV 50
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,633,722
Number of Sequences: 37544
Number of extensions: 373860
Number of successful extensions: 1145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -