Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30756
(730 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 1e-08
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30) 47 1e-05
SB_23940| Best HMM Match : MuDR (HMM E-Value=0.24) 32 0.41
SB_28173| Best HMM Match : Sugar_tr (HMM E-Value=0.022) 30 2.2
SB_40017| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0) 29 2.9
SB_23707| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=2.2) 29 5.1
SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14) 29 5.1
SB_23359| Best HMM Match : I-set (HMM E-Value=0) 28 6.7
SB_11070| Best HMM Match : Sugar_tr (HMM E-Value=0.00011) 28 6.7
SB_5976| Best HMM Match : Nucleoplasmin (HMM E-Value=1.2) 28 6.7
SB_896| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_24271| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15) 28 8.9
SB_50242| Best HMM Match : LISCH7 (HMM E-Value=7.5) 28 8.9
>SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 57.6 bits (133), Expect = 1e-08
Identities = 28/69 (40%), Positives = 35/69 (50%)
Frame = +3
Query: 270 PANWVSKINTPAFTRSDKRQMFYLHQFCDNCADLNFDNPKVVEKFDMVLKAWMGAGASGV 449
P NW+S A++ K +YLHQF DLNF NP VV VL W+ G G
Sbjct: 158 PNNWLSVFGGSAWSLDRKTNQYYLHQFFKEQPDLNFRNPDVVNATKEVLGFWLDKGVDGF 217
Query: 450 RLNNARHLL 476
R++ HLL
Sbjct: 218 RVDAVPHLL 226
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +1
Query: 106 TLDEFKILFNKIKKIGVRVIVDLIPNYVFTNHTWFVQS-ENSTEPYTDYFI 255
T+++F+ L I G+++++D +PN+ H WF++S N P +++I
Sbjct: 97 TMEDFESLLQDIHSRGMKLLLDFVPNHTSDQHDWFLESRSNRHNPRREWYI 147
>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
Length = 1093
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = +3
Query: 261 KEQPANWVSKINTPAFTRSDKRQMFYLHQFCDNCADLNFDNPKVVEKFDMVLKAWMGAGA 440
++ NW S A+ + K +YLHQF + DLN+ VV+ + V+K W G
Sbjct: 757 RDSANNWPSMNGGSAWEKDPKTNQYYLHQFSVDQPDLNYHEEAVVKAINGVMKFWSEKGV 816
Query: 441 SGVRLNNARHLL 476
G ++ +LL
Sbjct: 817 DGFSVSGIEYLL 828
Score = 35.9 bits (79), Expect = 0.034
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +1
Query: 46 IQSSGRVRPSADLRMLDKR-DTLDEFKILFNKIKKIGVRVIVDLIPNYVFTNHTWFVQSE 222
+ S G V DL+ ++ +++F+ L K +RVIVD +PN+ + WF +S
Sbjct: 684 VLSIGAVFSEEDLQDVNNALGKMEDFQNLLKKAHDRKMRVIVDFVPNHTSKKNKWFEESS 743
Query: 223 -NSTEPYTDYFI 255
N T ++++
Sbjct: 744 VNKTNSKRNWYV 755
>SB_23940| Best HMM Match : MuDR (HMM E-Value=0.24)
Length = 685
Score = 32.3 bits (70), Expect = 0.41
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 43 DIQSSGRVRPSADLRMLDK-RDTLDEFKILFNKIKKIGVRVIVDLIPNYVFTNHT 204
+I + G VR A+L++ D+ R+TL E + N I K + +IPN HT
Sbjct: 314 EIITPGLVRMQAELKLADQHRNTLSEQESKINSIAKSSSALSNSIIPNRYILRHT 368
>SB_28173| Best HMM Match : Sugar_tr (HMM E-Value=0.022)
Length = 453
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 282 VSKINTPAFTRSDKRQMFYLHQFCDNCADLNFDNP--KVVEKFDMV 413
V + TP F SD+ + CDNC FD P +V +++++
Sbjct: 63 VFAMGTPNFHCSDENSTCPQSKCCDNCTSYTFDGPFTSIVSEWNLI 108
>SB_40017| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 512
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +3
Query: 375 FDNPKVVEKF---DMVLKAWMGAGASGVRLNNARHLLVELLEEKTRVGAAVAWT 527
++N VV+ D+ + ++ G + ++ H+ ++LL EKTR G+ WT
Sbjct: 163 YENISVVKDLAPPDLEMLRFIHDGITPGKIPGREHIPMDLLREKTRYGSTYPWT 216
>SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1182
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 279 WVSKINTPAFTRSDKRQMFYLHQFCDNCADLNFDNPKV 392
+V TP DK Q+ Y + C+ CAD + NP V
Sbjct: 396 YVDTSTTPPSVLCDKCQVGYTGRQCEECADGYYGNPLV 433
>SB_23707| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=2.2)
Length = 445
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +2
Query: 527 ADHMRYDFWEHKHTTD-LPKLKELLARWSKIVTKESEPTVFTLKEDGSLPDLILL 688
A+H + W KH TD L + L+ R +I KE E + + L LL
Sbjct: 53 AEHFESEAWYIKHVTDLLENVMSLVTRTPEIYVKEEEEVLLPYYKVNEKVSLTLL 107
>SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14)
Length = 1624
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +2
Query: 80 TYECSTNVTHWTNSKF--CSTKLRRSE*E*LLI*SRTTCSPTIPGS-YRVRTALSPTLII 250
+++C T +T W F CS++ R C+PT+P + R PTL++
Sbjct: 1172 SWQCGTELTEWRKRHFVSCSSRWPRGR---ASRRDARACAPTMPSARLRHTQPRKPTLLV 1228
Query: 251 SL 256
SL
Sbjct: 1229 SL 1230
>SB_23359| Best HMM Match : I-set (HMM E-Value=0)
Length = 367
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = -2
Query: 657 SFSVNTVGSDSLVTIFDQRAKSSLSFGRSVVCLCSQKSYRM*SASTLLPRRRASSPQAIR 478
+ +V V ++ VT+ R + ++ GR V LC+ Y + S ++P R SP ++
Sbjct: 90 AIAVLNVKAEPQVTVSPSR-QHYVATGRQVELLCTVTGYPVPSIEWIVPNRTGLSPSLVK 148
Query: 477 RA 472
A
Sbjct: 149 VA 150
>SB_11070| Best HMM Match : Sugar_tr (HMM E-Value=0.00011)
Length = 468
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +3
Query: 282 VSKINTPAFTRSDKRQMFYLHQFCDNCADLNFDNP 386
V TP F SD + CDNC+ FD P
Sbjct: 62 VFAFGTPKFHCSDVNSTCAPSKCCDNCSSYTFDGP 96
>SB_5976| Best HMM Match : Nucleoplasmin (HMM E-Value=1.2)
Length = 356
Score = 28.3 bits (60), Expect = 6.7
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = -3
Query: 497 LLLKQFDEQVTRVIQS--DSTSTGTHPGLQDHVELLNNFRIIEVKISAVVTELMQVEHLT 324
LL Q+ + ++QS DS S+GT + +L+ ++IE +IS+ EL V + +
Sbjct: 275 LLRGQWLVKAQTLLQSIKDSKSSGTVV----NSAILDKVQVIEPEISSTNYELYMVSNAS 330
Query: 323 FIASCK 306
F+ CK
Sbjct: 331 FLCKCK 336
>SB_896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 968
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +3
Query: 282 VSKINTPAFTRSDKRQMFYLHQFCDNCADLNFDNP 386
V TP F SD + CDNC+ FD P
Sbjct: 575 VFAFGTPKFHCSDVNSTCAPSKCCDNCSSYTFDGP 609
>SB_24271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -2
Query: 435 RHPSRPSGPCRTSQQL 388
RHP RPS P RT+ QL
Sbjct: 5 RHPERPSPPSRTNSQL 20
>SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)
Length = 924
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 610 EDRHQRIRADGVHAEGRWLPAGPDTAEPQRVDACGP 717
+ +HQR + V +E W P+GP P + A GP
Sbjct: 499 QQQHQRPQGLSVTSESIWGPSGPTQTSPSMMSA-GP 533
>SB_50242| Best HMM Match : LISCH7 (HMM E-Value=7.5)
Length = 84
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/47 (25%), Positives = 18/47 (38%)
Frame = +3
Query: 246 LFHWTKEQPANWVSKINTPAFTRSDKRQMFYLHQFCDNCADLNFDNP 386
L +T N + + P + D ++ CDNC FD P
Sbjct: 31 LLFFTVSSAGNMIFSFSAPQYHCGDGNSSCQPNKCCDNCTSYVFDGP 77
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,259,537
Number of Sequences: 59808
Number of extensions: 426901
Number of successful extensions: 1315
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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