Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30756
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81050-6|CAB02856.1|  713|Caenorhabditis elegans Hypothetical pr...    32   0.37 
Z70034-5|CAA93851.2|  197|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U37429-16|AAA79341.1|  597|Caenorhabditis elegans Protein kinase...    28   5.9  
AF025666-1|AAB88885.1|  597|Caenorhabditis elegans protein kinas...    28   5.9  
AL021503-5|CAA16416.2|  325|Caenorhabditis elegans Hypothetical ...    28   7.9  

>Z81050-6|CAB02856.1|  713|Caenorhabditis elegans Hypothetical
           protein C50B6.7 protein.
          Length = 713

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +1

Query: 91  LDKRDTLD-EFKILFNKIKKIGVRVIVDLIPNYV 189
           LD R   + EF+ + N+  K+GVR+IVD++ N++
Sbjct: 91  LDSRSGNEQEFQDMVNRCNKVGVRIIVDIVMNHM 124


>Z70034-5|CAA93851.2|  197|Caenorhabditis elegans Hypothetical
           protein C18E9.5 protein.
          Length = 197

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +1

Query: 175 IPNYVFTNHTWFVQSENSTEPYTDYFIGPRNNLLIGFQKSTRQRLHEAINV 327
           + +YVF NHT+FV     T     Y    R    +GF K   QR  E+I+V
Sbjct: 132 VSHYVFVNHTFFVDRNGCTRQAYGYDEYLRR---LGFHKIRMQRT-ESISV 178


>U37429-16|AAA79341.1|  597|Caenorhabditis elegans Protein kinase c
           protein 3 protein.
          Length = 597

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 315 SDKRQMFYLHQFCDNCADLNFDNPKVVEKFD 407
           SD+    + HQF D    L+ DNP V+ + D
Sbjct: 546 SDRDLTHFDHQFTDELPQLSPDNPDVIARID 576


>AF025666-1|AAB88885.1|  597|Caenorhabditis elegans protein kinase
           C3 protein.
          Length = 597

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 315 SDKRQMFYLHQFCDNCADLNFDNPKVVEKFD 407
           SD+    + HQF D    L+ DNP V+ + D
Sbjct: 546 SDRDLTHFDHQFTDELPQLSPDNPDVIARID 576


>AL021503-5|CAA16416.2|  325|Caenorhabditis elegans Hypothetical
           protein Y68A4A.9 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 297 TPAFTRSDKRQMFYLHQFCDNCADLNF 377
           TPA  +SDK  +F LH +C  C D+ F
Sbjct: 41  TPAHMKSDKWLLFNLHCWC-ICLDITF 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,440,719
Number of Sequences: 27780
Number of extensions: 309015
Number of successful extensions: 985
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)