Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30756
         (730 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44440.1 68418.m05446 FAD-binding domain-containing protein s...    31   1.0  
At1g76405.2 68414.m08880 expressed protein                             30   1.8  
At1g69830.1 68414.m08034 alpha-amylase, putative / 1,4-alpha-D-g...    29   4.2  
At3g10230.1 68416.m01224 lycopene beta cyclase (LYC) identical t...    28   5.5  
At2g40475.1 68415.m04995 expressed protein                             28   5.5  
At2g39930.1 68415.m04907 isoamylase, putative / starch debranchi...    28   5.5  
At4g26090.1 68417.m03756 disease resistance protein RPS2 (CC-NBS...    28   7.3  
At3g08670.1 68416.m01007 expressed protein                             28   7.3  
At2g44520.1 68415.m05535 UbiA prenyltransferase family protein s...    28   7.3  
At1g07560.1 68414.m00809 leucine-rich repeat protein kinase, put...    28   7.3  
At2g07673.1 68415.m00898 hypothetical protein                          27   9.6  

>At5g44440.1 68418.m05446 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 533

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
 Frame = +1

Query: 52  SSGRVRPSADLRMLDKRDTLDEFKILFNKIKKIGVRVI------VDLIPNYVFTNHTWFV 213
           SS  V  S  ++++D   T+  FK+     KK  VR+I       D +P+ +F   T   
Sbjct: 234 SSFGVILSWKVKLVDVPSTITVFKVQKTS-KKEAVRIIKKWQYAADKVPDDLFIRTTLER 292

Query: 214 QSENSTEP-YTDYFIGPRNNLL 276
            ++N+    +T  +IGP NNLL
Sbjct: 293 SNKNAVHALFTGLYIGPVNNLL 314


>At1g76405.2 68414.m08880 expressed protein
          Length = 167

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +3

Query: 252 HWTKEQPANWVSKINTPAFTRSDKRQMFYLHQFCDNCADLNFDNPKVVEKF 404
           H+ K Q    + +       R+DKR  F +   CD   DLN  NPK   +F
Sbjct: 66  HYDKRQKLRCLVRGKKEFPVRADKRVTFNIKGRCDIDQDLNQKNPKGAAEF 116


>At1g69830.1 68414.m08034 alpha-amylase, putative /
           1,4-alpha-D-glucan glucanohydrolase, putative similar to
           SP|P17859 Alpha-amylase precursor (EC 3.2.1.1)
           (1,4-alpha-D-glucan glucanohydrolase) {Vigna mungo},
           alpha-amylase [Malus x domestica] GI:7532799; contains
           Pfam profile PF00128: Alpha amylase, catalytic domain
          Length = 887

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 79  DLRMLDKR-DTLDEFKILFNKIKKIGVRVIVDLIPNY 186
           DL  L+ R  T+DE K    K  K+G++V+ D + N+
Sbjct: 549 DLYNLNSRYGTIDELKDTVKKFHKVGIKVLGDAVLNH 585


>At3g10230.1 68416.m01224 lycopene beta cyclase (LYC) identical to
           lycopene beta cyclase GI:1399183|GB:AAB53337
           [Arabidopsis thaliana]
          Length = 501

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/48 (39%), Positives = 23/48 (47%)
 Frame = +2

Query: 479 RIA*GEDARRRGSSVDADHMRYDFWEHKHTTDLPKLKELLARWSKIVT 622
           ++A G  A   G   D D M +  W  KH    P+LKE   R SKI T
Sbjct: 237 QVAYGIVAEVDGHPFDVDKMVFMDWRDKHLDSYPELKE---RNSKIPT 281


>At2g40475.1 68415.m04995 expressed protein
          Length = 193

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/61 (31%), Positives = 33/61 (54%)
 Frame = -3

Query: 617 RSSTSEPRAP*ASAGRWCACAPRSRTACDPRPRYCRADARLLLKQFDEQVTRVIQSDSTS 438
           R S S   A  +S+  + + +P S+   + RPR C + +R  +K+ DE+   ++ S  TS
Sbjct: 103 RPSFSWSSASSSSSSSYSSSSPPSKV--EHRPRKCYSCSRSYVKEDDEE--EIVSSSPTS 158

Query: 437 T 435
           T
Sbjct: 159 T 159


>At2g39930.1 68415.m04907 isoamylase, putative / starch debranching
           enzyme, putative similar to isoamylase from [Solanum
           tuberosum] GI:27728145, [Triticum aestivum] GI:17932898,
           [Hordeum vulgare] GI:21314275, [Oryza sativa]
           GI:3252794; contains Pfam profiles PF00128: Alpha
           amylase catalytic domain, PF02922: Isoamylase N-terminal
           domain
          Length = 783

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +1

Query: 109 LDEFKILFNKIKKIGVRVIVDLIPNY 186
           ++EFKIL  +  K G+ VI+D++ N+
Sbjct: 315 INEFKILVKEAHKRGIEVIMDVVLNH 340


>At4g26090.1 68417.m03756 disease resistance protein RPS2
           (CC-NBS-LRR class), putative domain signature CC-NBS-LRR
           exists, suggestive of a disease resistance protein.
           identical to RPS2 (gi:13661831)
          Length = 909

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
 Frame = -2

Query: 225 VLTLYEPGMVGEHVVRDQINN------HSYSDLLNFVEQNFEFVQC 106
           ++ +Y PG VG+  +   INN      H Y D+L +V+ + EF +C
Sbjct: 177 IIGVYGPGGVGKTTLMQSINNELITKGHQY-DVLIWVQMSREFGEC 221


>At3g08670.1 68416.m01007 expressed protein 
          Length = 567

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = -2

Query: 717 RPASIDTLWFSSIRSGREPSS-FSVNTVGSDSLVTIFDQRAKSSLSFGRSVVCLCSQKSY 541
           RP SI T  +SS  SGR PSS  + ++    S +      ++SS S   S     S  S 
Sbjct: 159 RP-SISTSQYSSFTSGRSPSSILNTSSASVSSYIRPSSPSSRSSSSARPSTPTRTSSAS- 216

Query: 540 RM*SASTLLPRRRASSPQAIRRASDARYS 454
           R  + S + P   +SS    R +  +R S
Sbjct: 217 RSSTPSRIRPGSSSSSMDKARPSLSSRPS 245


>At2g44520.1 68415.m05535 UbiA prenyltransferase family protein
           similar to SP|Q12887 Protoheme IX farnesyltransferase,
           mitochondrial precursor (EC 2.5.1.-) (Heme O synthase)
           {Homo sapiens}, SP|P21592 COX10 {Saccharomyces
           cerevisiae}
          Length = 431

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 336 RTSDVYRFV*TLAC*FLKPN*QVVPWSNEIISV 238
           R S VYRF   ++     PN +++PWS E+ +V
Sbjct: 3   RRSVVYRFSSRISVSSSLPNPRLIPWSRELCAV 35


>At1g07560.1 68414.m00809 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 856

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
 Frame = +1

Query: 181 NYVFTNHTWFVQSEN-STEPYTDYFIGPRNNLLIGFQKSTRQRLHEAINVRCST----C- 342
           NY+      +   +N +T P  D ++GP     +  Q++      E I++  ST    C 
Sbjct: 103 NYLIVAMFTYGNYDNLNTHPKFDLYLGPNIWTTVDLQRNVNGTRAEIIHIPRSTSLQICL 162

Query: 343 ISSVTTALILTSIILKLLRSSTWS*RPGWVPVL 441
           + + TT  +++++ L+ LR++T+  + G +  L
Sbjct: 163 VKTGTTTPLISALELRPLRNNTYIPQSGSLKTL 195


>At2g07673.1 68415.m00898 hypothetical protein
          Length = 106

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 545 DFWEHKHTTDLPKLKELLARWSKIVTKESEP 637
           D  + KH  +  +L+  + RW K VT  S P
Sbjct: 62  DLTDRKHRPEQQQLQRRVTRWKKEVTTRSRP 92


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,458,032
Number of Sequences: 28952
Number of extensions: 281804
Number of successful extensions: 869
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)