Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30755
(752 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17; Eukary... 171 1e-41
UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209; Eukar... 159 5e-38
UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genom... 147 2e-34
UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein; ... 129 6e-29
UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2; Dictyos... 123 4e-27
UniRef50_UPI00015608D3 Cluster: PREDICTED: similar to ribosomal ... 120 5e-26
UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal ... 118 2e-25
UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia asia... 117 3e-25
UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1; Tet... 116 5e-25
UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168, w... 107 4e-22
UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3; ... 102 1e-20
UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep: An... 91 3e-17
UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1; Encepha... 91 3e-17
UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillar... 84 4e-15
UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n... 80 7e-14
UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4; ... 77 5e-13
UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lambl... 76 8e-13
UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6; Euryar... 66 9e-10
UniRef50_Q8ZT21 Cluster: 30S ribosomal protein S3Ae; n=4; Pyroba... 60 6e-08
UniRef50_A4D1I1 Cluster: Similar to ribosomal protein S3a; 40S r... 54 4e-06
UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1; Methan... 52 1e-05
UniRef50_A7QAT4 Cluster: Chromosome chr5 scaffold_72, whole geno... 52 2e-05
UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2; enviro... 52 2e-05
UniRef50_A1RXX5 Cluster: Ribosomal protein S3Ae; n=1; Thermofilu... 51 3e-05
UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1; Archae... 51 4e-05
UniRef50_A6NFQ6 Cluster: Uncharacterized protein ENSP00000341960... 45 0.002
UniRef50_A3H9G4 Cluster: Ribosomal protein S3Ae; n=1; Caldivirga... 44 0.003
UniRef50_Q0W2K9 Cluster: 30S ribosomal protein S3AE; n=2; Euryar... 44 0.004
UniRef50_Q5V296 Cluster: 30S ribosomal protein S3Ae; n=4; Haloba... 43 0.009
UniRef50_A7D401 Cluster: Ribosomal protein S3Ae; n=2; Halorubrum... 42 0.022
UniRef50_A4YCU2 Cluster: Ribosomal protein S3Ae; n=1; Metallosph... 39 0.15
UniRef50_Q9YCV8 Cluster: 30S ribosomal protein S3Ae; n=12; Archa... 38 0.27
UniRef50_Q87BL9 Cluster: DNA helicase; n=5; Xylella fastidiosa|R... 36 1.4
UniRef50_A4F9H9 Cluster: Putative uncharacterized protein; n=1; ... 36 1.4
UniRef50_Q3LW71 Cluster: Ribosomal protein S3a; n=1; Bigelowiell... 34 4.3
UniRef50_Q5KZ52 Cluster: Hypothetical conserved protein; n=1; Ge... 33 5.7
UniRef50_A5UKY8 Cluster: Small subunit ribosomal protein S3Ae; n... 33 5.7
UniRef50_Q119K9 Cluster: Putative uncharacterized protein precur... 33 7.6
UniRef50_A7S0H0 Cluster: Predicted protein; n=1; Nematostella ve... 33 7.6
UniRef50_Q2TZP1 Cluster: Predicted RNA-binding protein homologou... 33 7.6
UniRef50_A0RTS7 Cluster: Ribosomal protein S3AE; n=2; Thermoprot... 33 7.6
UniRef50_Q0KDB8 Cluster: L-Amino-acid oxidase; n=3; cellular org... 33 10.0
UniRef50_A6R232 Cluster: Predicted protein; n=1; Ajellomyces cap... 33 10.0
UniRef50_A2SQ57 Cluster: Ribosomal protein S3Ae; n=1; Methanocor... 33 10.0
>UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17;
Eukaryota|Rep: 40S ribosomal protein S3a - Anopheles
gambiae (African malaria mosquito)
Length = 269
Score = 171 bits (417), Expect = 1e-41
Identities = 82/134 (61%), Positives = 101/134 (75%)
Frame = +1
Query: 256 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 435
VL NFHGM LTTDKLR MVKKWQTLIE ++DVKTTDG++LRVFCIGFT KDS+SQRKTCY
Sbjct: 99 VLTNFHGMALTTDKLRSMVKKWQTLIECSVDVKTTDGFMLRVFCIGFTIKDSMSQRKTCY 158
Query: 436 AQHTQVRAIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKV 615
AQH+Q++ IR KM II R++T++D + + + +YPL DV IRKV
Sbjct: 159 AQHSQIKNIRAKMTAIIKREITSTDLKGVVEKLLPDSIAKDIEKACQVVYPLHDVYIRKV 218
Query: 616 KVLKRPRFEISKLM 657
KVLK+PRF++S LM
Sbjct: 219 KVLKKPRFDLSSLM 232
Score = 150 bits (363), Expect = 4e-35
Identities = 70/84 (83%), Positives = 76/84 (90%)
Frame = +2
Query: 2 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 181
KKG KKK+VDPFTRKDWYDVKAP+MF RQVG TLVNRTQGTKIAS+GLKGRVFEVSLAD
Sbjct: 14 KKGSKKKVVDPFTRKDWYDVKAPNMFKNRQVGKTLVNRTQGTKIASDGLKGRVFEVSLAD 73
Query: 182 LQADTDAERSFRKFRLIAEYVQGR 253
LQ + DAERSFRKF+L+AE V GR
Sbjct: 74 LQNEPDAERSFRKFKLVAESVNGR 97
>UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209;
Eukaryota|Rep: 40S ribosomal protein S3a - Homo sapiens
(Human)
Length = 264
Score = 159 bits (387), Expect = 5e-38
Identities = 76/133 (57%), Positives = 95/133 (71%)
Frame = +1
Query: 259 LCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 438
L NFHGMDLT DK+ MVKKWQT+IEA++DVKTTDGY+LR+FC+GFT K + RKT YA
Sbjct: 97 LTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYA 156
Query: 439 QHTQVRAIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKVK 618
QH QVR IRKKM EI+TR+V +D + + + IYPL DV +RKVK
Sbjct: 157 QHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVK 216
Query: 619 VLKRPRFEISKLM 657
+LK+P+FE+ KLM
Sbjct: 217 MLKKPKFELGKLM 229
Score = 132 bits (318), Expect = 1e-29
Identities = 63/86 (73%), Positives = 73/86 (84%)
Frame = +2
Query: 2 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 181
KKG KKK+VDPF++KDWYDVKAP+MF+ R +G TLV RTQGTKIAS+GLKGRVFEVSLAD
Sbjct: 14 KKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLAD 73
Query: 182 LQADTDAERSFRKFRLIAEYVQGRMC 259
LQ D E +FRKF+LI E VQG+ C
Sbjct: 74 LQND---EVAFRKFKLITEDVQGKNC 96
>UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=3; core eudicotyledons|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 656
Score = 147 bits (357), Expect = 2e-34
Identities = 72/134 (53%), Positives = 91/134 (67%)
Frame = +1
Query: 256 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 435
VL NF GMD TTDKLR +V+KWQTLIEA++DVKTTD Y LR+FCI FT K +KTCY
Sbjct: 491 VLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRLFCIAFTKKRVNQNKKTCY 550
Query: 436 AQHTQVRAIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKV 615
AQ +Q+R IR+KM EI+T T+ D + R + IYPL++V IRKV
Sbjct: 551 AQSSQIRQIRRKMREIMTNMATSCDLKELVKKFIPESIGREIEKATSSIYPLQNVYIRKV 610
Query: 616 KVLKRPRFEISKLM 657
K+LK P+F++ KLM
Sbjct: 611 KILKAPKFDLGKLM 624
Score = 124 bits (299), Expect = 2e-27
Identities = 61/84 (72%), Positives = 69/84 (82%)
Frame = +2
Query: 2 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 181
KKG KKK DPF +KDWYD+KAPS+F R VG TLV+RTQGTKIASEGLK RVFE+SLAD
Sbjct: 408 KKGGKKKAADPFAKKDWYDIKAPSVFEVRNVGKTLVSRTQGTKIASEGLKHRVFEISLAD 467
Query: 182 LQADTDAERSFRKFRLIAEYVQGR 253
LQAD D +++RK RL AE VQGR
Sbjct: 468 LQADED--QAYRKIRLRAEDVQGR 489
>UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein;
n=9; Dikarya|Rep: 40S ribosomal protein S1-like protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 256
Score = 129 bits (312), Expect = 6e-29
Identities = 63/133 (47%), Positives = 89/133 (66%)
Frame = +1
Query: 259 LCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 438
L NFHG+D T+DKLR +V+KWQ+LIEAN+ VKTTD Y+LR+F I T + +KT YA
Sbjct: 97 LTNFHGLDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAVTKRRPNQIKKTTYA 156
Query: 439 QHTQVRAIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKVK 618
+Q+RAIR+KM EII R+ + + + R + GIYPL++V IRKVK
Sbjct: 157 ASSQIRAIRRKMTEIIQREASTCTLQQLTNKLIPEVIGREIEKATQGIYPLQNVHIRKVK 216
Query: 619 VLKRPRFEISKLM 657
+LK+P+F++ L+
Sbjct: 217 LLKQPKFDLGGLL 229
Score = 109 bits (262), Expect = 7e-23
Identities = 52/86 (60%), Positives = 64/86 (74%)
Frame = +2
Query: 2 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 181
KKG+KKK DPF RKDWY +KAP+ F+ R VG TLVNR+ G K A++ LKGR+FEVSLAD
Sbjct: 13 KKGLKKKTQDPFARKDWYGIKAPAPFNIRDVGKTLVNRSSGMKNANDALKGRIFEVSLAD 72
Query: 182 LQADTDAERSFRKFRLIAEYVQGRMC 259
LQ D D +FRK +L + VQG+ C
Sbjct: 73 LQKDED--HAFRKIKLRVDEVQGKNC 96
>UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2;
Dictyostelium discoideum|Rep: 40S ribosomal protein S3A
- Dictyostelium discoideum AX4
Length = 273
Score = 123 bits (297), Expect = 4e-27
Identities = 72/164 (43%), Positives = 99/164 (60%), Gaps = 14/164 (8%)
Frame = +1
Query: 205 KVFPQIQINRRICARTYVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 384
+VF +I++ VL NF+GMDLT+DKLR ++ KW TLIE +DVKTTDGY LRVF
Sbjct: 78 QVFRKIKLRAEEVEGRNVLTNFYGMDLTSDKLRSLIHKWSTLIECFVDVKTTDGYFLRVF 137
Query: 385 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSD-------------SG-RW 522
I FT K ++KT YA+ ++V+AIRKKM +I+T V+++D +G
Sbjct: 138 AICFTKKGESQKKKTSYAKTSRVKAIRKKMVDILTETVSSNDLKTVVDYLIGVSLNGVTT 197
Query: 523 *TS*FLTPLPRTSRRPAMGIYPLRDVCIRKVKVLKRPRFEISKL 654
S F L R I+P+ +V IRKVKVLK P+ + +KL
Sbjct: 198 NASGFAPTLAEKIRIEGSSIFPIHNVFIRKVKVLKTPKVDAAKL 241
Score = 99 bits (238), Expect = 6e-20
Identities = 55/90 (61%), Positives = 67/90 (74%), Gaps = 6/90 (6%)
Frame = +2
Query: 2 KKGVKK--KIVDPFTRKDWYDVKAPSMFSK----RQVGTTLVNRTQGTKIASEGLKGRVF 163
KKG KK K VDPFTRK+WY V+AP+ F K +VG T VNRTQGTK+AS+GLKGRV+
Sbjct: 6 KKGSKKGGKKVDPFTRKEWYVVRAPTQFFKSPADNKVGFTPVNRTQGTKLASDGLKGRVY 65
Query: 164 EVSLADLQADTDAERSFRKFRLIAEYVQGR 253
EVSLAD++ D + FRK +L AE V+GR
Sbjct: 66 EVSLADMK--DDESQVFRKIKLRAEEVEGR 93
>UniRef50_UPI00015608D3 Cluster: PREDICTED: similar to ribosomal
protein S3a; n=1; Equus caballus|Rep: PREDICTED: similar
to ribosomal protein S3a - Equus caballus
Length = 153
Score = 120 bits (288), Expect = 5e-26
Identities = 58/86 (67%), Positives = 69/86 (80%)
Frame = +2
Query: 2 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 181
KKG KKK VD ++KDWYD+KAP+MF+ R +G TLV RTQGTKIAS+GLKG VFE+SLAD
Sbjct: 14 KKGAKKKAVDQISKKDWYDMKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGGVFEMSLAD 73
Query: 182 LQADTDAERSFRKFRLIAEYVQGRMC 259
LQ D E +FRKF+LI E VQG+ C
Sbjct: 74 LQND---EVAFRKFKLITEDVQGKRC 96
>UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal
protein S3a isoform 5; n=18; Eutheria|Rep: PREDICTED:
similar to ribosomal protein S3a isoform 5 - Homo
sapiens
Length = 211
Score = 118 bits (283), Expect = 2e-25
Identities = 59/86 (68%), Positives = 69/86 (80%)
Frame = +2
Query: 2 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 181
KKG KKK+VDPF++KDWYDV AP+MF+ R +G TLV RTQGTKIAS+ GRVFEVSLAD
Sbjct: 14 KKGAKKKVVDPFSKKDWYDVNAPAMFNIRNIGKTLVTRTQGTKIASD---GRVFEVSLAD 70
Query: 182 LQADTDAERSFRKFRLIAEYVQGRMC 259
LQ D E +FRKF+LI E VQG+ C
Sbjct: 71 LQND---EVAFRKFKLITEDVQGKNC 93
Score = 58.4 bits (135), Expect = 2e-07
Identities = 29/66 (43%), Positives = 40/66 (60%)
Frame = +1
Query: 460 IRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKVKVLKRPRF 639
IRKKM EI+TR+V +D + + + IYPL DV +RKVK+LK+P+F
Sbjct: 111 IRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDVEKACQSIYPLHDVFVRKVKMLKKPKF 170
Query: 640 EISKLM 657
E+ KLM
Sbjct: 171 ELGKLM 176
>UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia
asiatica|Rep: Ribosomal protein S3a - Taenia asiatica
(Asian tapeworm)
Length = 183
Score = 117 bits (282), Expect = 3e-25
Identities = 57/135 (42%), Positives = 83/135 (61%)
Frame = +1
Query: 253 YVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTC 432
+ L NFHGMDLT DKL MV KWQ+ IEA++DVKTTDGY LR F I FT K Q+
Sbjct: 21 HCLTNFHGMDLTHDKLCGMVLKWQSTIEAHVDVKTTDGYTLRFFVIAFTKKQE-DQKSHA 79
Query: 433 YAQHTQVRAIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRK 612
YAQ T+++ +R ++ E++ R+V D + + + A I+PL +RK
Sbjct: 80 YAQTTRIKKLRAEIVEVVQREVARCDLKSVVQKLIPDSIGQDAMNEASSIFPLSGALVRK 139
Query: 613 VKVLKRPRFEISKLM 657
VKVLK+P+ ++ +++
Sbjct: 140 VKVLKKPKLDLGRIL 154
>UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1;
Tetrahymena thermophila SB210|Rep: Ribosomal S3Ae family
protein - Tetrahymena thermophila SB210
Length = 265
Score = 116 bits (280), Expect = 5e-25
Identities = 56/133 (42%), Positives = 84/133 (63%), Gaps = 3/133 (2%)
Frame = +1
Query: 265 NFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSL---SQRKTCY 435
+F+G+D+T D+L M++KWQTLIEA +D KT DGY++RVF + FT K S S TCY
Sbjct: 102 SFYGLDITRDRLCSMIRKWQTLIEARVDCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTCY 161
Query: 436 AQHTQVRAIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKV 615
A+ +QVRAIR+K+ IT + + + + + I+PL+++ IRKV
Sbjct: 162 AKSSQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTKKIEKETKNIFPLQNITIRKV 221
Query: 616 KVLKRPRFEISKL 654
KVLKRP+ + +K+
Sbjct: 222 KVLKRPKLDATKI 234
Score = 91.9 bits (218), Expect = 2e-17
Identities = 41/84 (48%), Positives = 60/84 (71%)
Frame = +2
Query: 2 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 181
KKG KK+ +DP +RK+WYD +AP FS + G TLV ++ G +IASE +KGRV E +LAD
Sbjct: 15 KKGAKKRTIDPLSRKEWYDFRAPIPFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLAD 74
Query: 182 LQADTDAERSFRKFRLIAEYVQGR 253
L+ D ++++RK +L+ + V GR
Sbjct: 75 LK-DNSNDKAWRKVKLVIDEVDGR 97
>UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168,
whole genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_168,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 291
Score = 107 bits (256), Expect = 4e-22
Identities = 51/130 (39%), Positives = 82/130 (63%)
Frame = +1
Query: 265 NFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQH 444
+F+G+D T DK+ M+KK QTLIE ++ ++ DGY+LR+F I FT QRKT YAQ
Sbjct: 98 SFYGLDSTKDKIFGMIKKRQTLIETQVEARSQDGYILRIFVIAFTKSIKNQQRKTTYAQR 157
Query: 445 TQVRAIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKVKVL 624
+Q++ IRKK+ EI+ ++V+ + L + + I+PL+++ +RKVK++
Sbjct: 158 SQIKDIRKKIVEIVLKEVSKKSITQLLGFFNQESLAKEIGKATRTIFPLQNITLRKVKLV 217
Query: 625 KRPRFEISKL 654
KRP+ + KL
Sbjct: 218 KRPKVDAQKL 227
Score = 83.0 bits (196), Expect = 7e-15
Identities = 39/86 (45%), Positives = 59/86 (68%)
Frame = +2
Query: 2 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 181
KKG +KK +DP RK+W+++ AP F+ G T +N++ GT +A+E +KGRV E SLAD
Sbjct: 12 KKG-QKKTIDPLARKEWFELTAPVPFAAGGFGYTCINKSAGTVVATEAIKGRVVEASLAD 70
Query: 182 LQADTDAERSFRKFRLIAEYVQGRMC 259
LQ +D + ++RK +LI + V+G C
Sbjct: 71 LQGQSD-QMAWRKVKLIIDDVEGTRC 95
>UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S3a - Entamoeba histolytica HM-1:IMSS
Length = 257
Score = 102 bits (244), Expect = 1e-20
Identities = 44/81 (54%), Positives = 63/81 (77%)
Frame = +1
Query: 268 FHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHT 447
FHG+ LTTDKLR +VKKW TLIE ++DVKTTDG+++R+FCIGFT++ S +KT YA+
Sbjct: 102 FHGLKLTTDKLRSIVKKWCTLIETSVDVKTTDGHLIRIFCIGFTSRKSNQIKKTSYAKSA 161
Query: 448 QVRAIRKKMCEIITRDVTNSD 510
Q++ IRK M +IT++ + +
Sbjct: 162 QIKKIRKIMNNLITKEAASRE 182
Score = 88.6 bits (210), Expect = 1e-16
Identities = 44/86 (51%), Positives = 58/86 (67%)
Frame = +2
Query: 2 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 181
KKG K+KI +PF++K+WY+VK P F +R VG +VN+T GT+IASE LKGRV EV+LAD
Sbjct: 15 KKGSKRKIAEPFSKKEWYNVKVPKNFKRRTVGQIVVNKTAGTRIASEQLKGRVVEVNLAD 74
Query: 182 LQADTDAERSFRKFRLIAEYVQGRMC 259
L + KF+ E V G+ C
Sbjct: 75 LMENEKFGAYNYKFK--CEDVNGKDC 98
>UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep:
Antigen - Leishmania major
Length = 264
Score = 91.1 bits (216), Expect = 3e-17
Identities = 41/84 (48%), Positives = 56/84 (66%)
Frame = +2
Query: 2 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 181
K+G + K + RK+WYDV AP+ F KRQ T+ N+TQGT+IA++ L+GRVFE +LAD
Sbjct: 14 KRGKRGKAQETMARKEWYDVVAPANFEKRQFAKTICNKTQGTRIAADVLRGRVFEANLAD 73
Query: 182 LQADTDAERSFRKFRLIAEYVQGR 253
L E ++RK R + VQGR
Sbjct: 74 LNQSAGEEEAYRKVRFTVQEVQGR 97
Score = 91.1 bits (216), Expect = 3e-17
Identities = 44/134 (32%), Positives = 77/134 (57%)
Frame = +1
Query: 256 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 435
+L FH M++TTDK+ +++KW T +E ++VKT DGY +R+F + FT + Q + CY
Sbjct: 99 LLTQFHSMEVTTDKMANLLRKWCTTMETTVEVKTADGYTMRLFVVAFTKPQANQQSRNCY 158
Query: 436 AQHTQVRAIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKV 615
A+ V+ +R ++ ++I R ++ + L R I PLR++ IRKV
Sbjct: 159 AKQRLVKWLRMRITKMIKRRLSKVQIKEAVSLLTRNVLSDALVRRCNPILPLRELRIRKV 218
Query: 616 KVLKRPRFEISKLM 657
+V++ P+F+ L+
Sbjct: 219 RVVRTPKFDAQALL 232
>UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S3A
- Encephalitozoon cuniculi
Length = 189
Score = 91.1 bits (216), Expect = 3e-17
Identities = 45/120 (37%), Positives = 69/120 (57%)
Frame = +1
Query: 268 FHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHT 447
F GM+LT+DK + M+KKW TLIEA D+ DG V RVF +G T + +KTCY +H+
Sbjct: 52 FDGMELTSDKHKAMIKKWHTLIEAQKDIVAKDGSVFRVFVMGVTRRHPGYVKKTCYVKHS 111
Query: 448 QVRAIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKVKVLK 627
+ IRK M ++I +++ D + + + I+PL++ C+RKVK +K
Sbjct: 112 DEKKIRKIMFDVIEEELSGCDVQKIMKKLANETVGKRIEELGSEIFPLQNCCVRKVKTIK 171
>UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillardia
theta|Rep: 40S ribosomal Protein S3a - Guillardia theta
(Cryptomonas phi)
Length = 219
Score = 83.8 bits (198), Expect = 4e-15
Identities = 42/120 (35%), Positives = 68/120 (56%)
Frame = +1
Query: 268 FHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHT 447
FHG+ LT DK+ ++KKW TLIE ++ KT DGY L++F I + K + KT Y +
Sbjct: 96 FHGLTLTRDKICSLIKKWHTLIEVEVNFKTKDGYFLKLFLIAQSKKPKNMKSKTVYINSS 155
Query: 448 QVRAIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKVKVLK 627
Q RA+R+++ +II ++ N D + + + I+P+ V IRK+KV++
Sbjct: 156 QKRALRRRITDIIIKEGINMDIKDFIHRIYSLKIYEKIEINCSKIFPIHQVNIRKIKVVE 215
>UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n=1;
Rattus norvegicus|Rep: UPI00005042B8 UniRef100 entry -
Rattus norvegicus
Length = 237
Score = 79.8 bits (188), Expect = 7e-14
Identities = 50/133 (37%), Positives = 74/133 (55%), Gaps = 1/133 (0%)
Frame = +1
Query: 259 LCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT-NKDSLSQRKTCY 435
L N +GMDLT DK V KWQ ++EA+ DVKT D Y+L +FC+G+T N + R+
Sbjct: 82 LTNSYGMDLTWDKRCNKVIKWQ-MVEAHADVKTADYYLLCLFCVGYTTNVTTRYARQLVC 140
Query: 436 AQHTQVRAIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKV 615
AQ+ QV I +I+ D +D + + + IYPL DV +RKV
Sbjct: 141 AQYQQVHQIWLITIQIM--DQRRTDLKEVLNKLVPDNVGKDVEKACQFIYPLHDVFVRKV 198
Query: 616 KVLKRPRFEISKL 654
K+L++P+ ++ KL
Sbjct: 199 KILQKPKLDLGKL 211
Score = 68.5 bits (160), Expect = 2e-10
Identities = 39/82 (47%), Positives = 51/82 (62%)
Frame = +2
Query: 8 GVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 187
G ++K +KD YDVKA +MF+ R +G T V R Q TK+ S GL G VFE SLA LQ
Sbjct: 1 GARRKTARRAKKKDRYDVKALTMFNVRNIGKTQVLRKQETKMVSVGLNGLVFEASLASLQ 60
Query: 188 ADTDAERSFRKFRLIAEYVQGR 253
D + RKF+LI E ++G+
Sbjct: 61 ND---KVVVRKFKLITEDMRGK 79
Score = 39.5 bits (88), Expect = 0.087
Identities = 14/21 (66%), Positives = 20/21 (95%)
Frame = +3
Query: 510 LREVVNKLIPDSIAKDIEKAC 572
L+EV+NKL+PD++ KD+EKAC
Sbjct: 164 LKEVLNKLVPDNVGKDVEKAC 184
>UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3Ae,
putative - Trichomonas vaginalis G3
Length = 247
Score = 77.0 bits (181), Expect = 5e-13
Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Frame = +1
Query: 232 RRICARTYVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDS 411
R I A + V F GM LT DKL +++K++T+I+A++D KT DG++LR+F IGFT K +
Sbjct: 84 RSIAAGSEVYTQFAGMRLTHDKLDSIMRKYRTMIDASVDAKTADGFILRLFTIGFTKKLA 143
Query: 412 LSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSDSGRW*TS*FL-TPLPRTSRRPAMGIYP 588
S + YA + R +R M + +T D ++ F+ + I
Sbjct: 144 NSHKNHTYANSHKARQVRDVMIKALT-DACEANGVEQLCKDFVDEKIENEIVEKCKQICQ 202
Query: 589 LRDVCIRKVKVLKRP 633
+ V I KVKV+K P
Sbjct: 203 IESVYITKVKVIKAP 217
>UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_675_17761_17015 - Giardia lamblia
ATCC 50803
Length = 248
Score = 76.2 bits (179), Expect = 8e-13
Identities = 44/126 (34%), Positives = 65/126 (51%)
Frame = +1
Query: 259 LCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 438
L NFHGMD+T K + +K I+ +D+ TTDGY+LRVF I FT++ +RK C+
Sbjct: 97 LTNFHGMDITRHKYGSLFRKGCDCIDVFMDIPTTDGYLLRVFVIAFTDRFRFQRRKNCHV 156
Query: 439 QHTQVRAIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKVK 618
+ +R +R + E + ++ T + I RDV IR+VK
Sbjct: 157 KGRVIRMMRAGIYETLHNELGKVSIPVLVTKLSNFEVNAKLTEALQKITMCRDVMIRRVK 216
Query: 619 VLKRPR 636
V+KRPR
Sbjct: 217 VVKRPR 222
Score = 65.7 bits (153), Expect = 1e-09
Identities = 31/86 (36%), Positives = 48/86 (55%)
Frame = +2
Query: 2 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 181
KK ++K DP+ +K+WY V AP+ F R +G T V +T G ++A++ + RV+EV+L D
Sbjct: 11 KKITQRKNPDPYLKKEWYPVIAPAHFKSRHIGQTPVTKTAGLRVATDVINHRVYEVNLGD 70
Query: 182 LQADTDAERSFRKFRLIAEYVQGRMC 259
L + KF L + V C
Sbjct: 71 LNPGAEDLNGNTKFYLQTQLVSDGKC 96
>UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6;
Euryarchaeota|Rep: 30S ribosomal protein S3Ae -
Methanosarcina mazei (Methanosarcina frisia)
Length = 204
Score = 66.1 bits (154), Expect = 9e-10
Identities = 45/120 (37%), Positives = 67/120 (55%)
Frame = +1
Query: 274 GMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQV 453
G +LTTD +R +VK+ + I+AN+DV+T DG+V+RV FT K A+ +Q+
Sbjct: 84 GHELTTDYVRSIVKRQTSRIDANVDVRTKDGFVIRVKPTCFTIK---------RARSSQM 134
Query: 454 RAIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKVKVLKRP 633
+AIR+ M +I+ + + +D + L L R A IYPLR V IRK +V P
Sbjct: 135 QAIREMMVDIVKKRASETDFETFMQEAILGRLSAAIYRQAKFIYPLRRVEIRKTQVEAMP 194
Score = 32.7 bits (71), Expect = 10.0
Identities = 13/35 (37%), Positives = 26/35 (74%)
Frame = +2
Query: 2 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTL 106
+K V++K+ D + K+WY+++AP+ ++ VGTT+
Sbjct: 3 RKKVQRKL-DGWKSKEWYNIEAPAYLNRVIVGTTM 36
>UniRef50_Q8ZT21 Cluster: 30S ribosomal protein S3Ae; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S3Ae -
Pyrobaculum aerophilum
Length = 221
Score = 60.1 bits (139), Expect = 6e-08
Identities = 42/125 (33%), Positives = 63/125 (50%)
Frame = +1
Query: 259 LCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 438
L F G++LT D +R +V+K + + A +VKT DG V+R+ +G T + +K+
Sbjct: 88 LTRFKGLELTRDYIRSLVRKGTSKVTAITEVKTKDGMVMRIAVLGITTHRIGTAQKS--- 144
Query: 439 QHTQVRAIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKVK 618
A+RKKM E + + DSG++ L A I P+R V I K+K
Sbjct: 145 ------AMRKKMIETLVKKAAELDSGQFLKEILEGTLAADLFIVAKKIAPMRKVEIAKIK 198
Query: 619 VLKRP 633
VLK P
Sbjct: 199 VLKYP 203
>UniRef50_A4D1I1 Cluster: Similar to ribosomal protein S3a; 40S
ribosomal protein S3a; v-fos transformation effector
protein 1; n=2; Eutheria|Rep: Similar to ribosomal
protein S3a; 40S ribosomal protein S3a; v-fos
transformation effector protein 1 - Homo sapiens (Human)
Length = 119
Score = 54.0 bits (124), Expect = 4e-06
Identities = 21/34 (61%), Positives = 28/34 (82%)
Frame = +2
Query: 2 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTT 103
KKG KKK++D F++KDWYDVKA +MF+ R +G T
Sbjct: 14 KKGAKKKVIDQFSKKDWYDVKALAMFNIRNIGKT 47
Score = 38.7 bits (86), Expect = 0.15
Identities = 17/39 (43%), Positives = 27/39 (69%)
Frame = +1
Query: 541 TPLPRTSRRPAMGIYPLRDVCIRKVKVLKRPRFEISKLM 657
TP P + P + + R +C++KVK+LK+P+FE+ KLM
Sbjct: 47 TPSPGP-KEPKLHLMVSRVMCLKKVKMLKKPKFELGKLM 84
>UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3Ae -
Methanopyrus kandleri
Length = 211
Score = 52.4 bits (120), Expect = 1e-05
Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Frame = +1
Query: 250 TYVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKT 429
T F G L D +R +V++ + I+ IDV T DGY +RV + FT T
Sbjct: 69 TTAYSKFEGHRLMRDYVRSLVRRGTSRIDGVIDVVTKDGYKVRVAGLAFT---------T 119
Query: 430 CYAQHTQVRAIRKKMCEIITRDVTNSDSGRW*TS*FL----TPLPRTSRRPAMGIYPLRD 597
A+ +Q RAIRK+M ++I + D + +P + IYP+R
Sbjct: 120 RRAKTSQQRAIRKEMFKVIEENAKECDFDEFIRRCLSISEEESIPEQIKEAGRKIYPIRQ 179
Query: 598 VCIRKVKVLKRP 633
IRK +VL+ P
Sbjct: 180 AEIRKTEVLEEP 191
>UniRef50_A7QAT4 Cluster: Chromosome chr5 scaffold_72, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_72, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 168
Score = 52.0 bits (119), Expect = 2e-05
Identities = 30/83 (36%), Positives = 49/83 (59%)
Frame = -2
Query: 250 SLHIFGD*SEFAERPFRVSVSL*ISQGNFENSSLQSFRSNFRSLGTVDKRGADLPLAEHR 71
SLH+ G S+ + + L ISQGN ++S L+ FR + S + +K A++ AE R
Sbjct: 61 SLHVLGSQSDLPVG--MILIVLNISQGNLKHSVLEPFRGDLGSQSSANKGFANISDAEDR 118
Query: 70 RSLDIVPIFASEWVDNLLLNTFF 2
R L+++P+ S+ V LLL++ F
Sbjct: 119 RRLNVIPVLLSKRVGCLLLSSLF 141
>UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2;
environmental samples|Rep: SSU ribosomal protein S3AE -
uncultured euryarchaeote Alv-FOS1
Length = 227
Score = 52.0 bits (119), Expect = 2e-05
Identities = 40/136 (29%), Positives = 65/136 (47%)
Frame = +1
Query: 250 TYVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKT 429
T F G D+TTD +R M+++ ++ I+ +V+T+DGY +RV + ++ S KT
Sbjct: 80 TNAYTRFIGHDMTTDYIRRMIRRRRSRIDMIFNVETSDGYRMRVKVLTVPDRRIKSSIKT 139
Query: 430 CYAQHTQVRAIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIR 609
IRKK+ E +T + PR + IYP+R + IR
Sbjct: 140 ---------EIRKKIQEYLTEKARAMTFSEYVKYIISDDAPRELSKELKVIYPVRRIEIR 190
Query: 610 KVKVLKRPRFEISKLM 657
K +VL P +I +L+
Sbjct: 191 KSEVLHFPEEKIVELV 206
>UniRef50_A1RXX5 Cluster: Ribosomal protein S3Ae; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein S3Ae - Thermofilum
pendens (strain Hrk 5)
Length = 207
Score = 51.2 bits (117), Expect = 3e-05
Identities = 37/123 (30%), Positives = 66/123 (53%)
Frame = +1
Query: 277 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVR 456
M++T D +R +V++ + ++A +DV+T DG +RV + T +S+ KT +Q +
Sbjct: 83 MEMTRDYIRSLVRRGTSRVDAILDVQTKDGVKMRVMALAVT----VSRIKT-----SQKK 133
Query: 457 AIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKVKVLKRPR 636
AIR+ M +II+ + D + + + + A IYP++ V + K+KVL P
Sbjct: 134 AIRRIMFDIISEKAASLDFDTFIQQAVIGTMATEMQMQAKKIYPIKKVEVYKIKVL-TPT 192
Query: 637 FEI 645
EI
Sbjct: 193 TEI 195
>UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3Ae -
Archaeoglobus fulgidus
Length = 211
Score = 50.8 bits (116), Expect = 4e-05
Identities = 39/122 (31%), Positives = 63/122 (51%)
Frame = +1
Query: 268 FHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHT 447
F +LT + L + ++ + IE +DV T DGY LRV + FT + + KT +
Sbjct: 85 FWRFELTREYLNSLTRRRTSKIEDIVDVTTADGYKLRVKSVVFT----VRRCKT-----S 135
Query: 448 QVRAIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKVKVLK 627
Q RAIR M +I+ ++ + ++ L +P + A IYP+R V IRK+++L
Sbjct: 136 QKRAIRAIMRQIVVEKASSLNFVQFLQECVLGKVPAEIYKNAKKIYPIRRVEIRKIELLA 195
Query: 628 RP 633
P
Sbjct: 196 EP 197
>UniRef50_A6NFQ6 Cluster: Uncharacterized protein ENSP00000341960;
n=40; Coelomata|Rep: Uncharacterized protein
ENSP00000341960 - Homo sapiens (Human)
Length = 79
Score = 44.8 bits (101), Expect = 0.002
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +1
Query: 565 RPAMGIYPLRDVCIRKVKVLKRPRFEISKLM 657
+ IYPL DV +RKVK+LK+P+FE+ KLM
Sbjct: 14 KACQSIYPLHDVFVRKVKMLKKPKFELGKLM 44
Score = 36.7 bits (81), Expect = 0.61
Identities = 16/21 (76%), Positives = 16/21 (76%)
Frame = +3
Query: 525 NKLIPDSIAKDIEKACHGHLP 587
NKLIPDSI KDIEKAC P
Sbjct: 1 NKLIPDSIGKDIEKACQSIYP 21
>UniRef50_A3H9G4 Cluster: Ribosomal protein S3Ae; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S3Ae -
Caldivirga maquilingensis IC-167
Length = 221
Score = 44.4 bits (100), Expect = 0.003
Identities = 38/126 (30%), Positives = 56/126 (44%)
Frame = +1
Query: 259 LCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 438
L F+GM+LT D +R +V++ + + DV T DG LR+ + T T
Sbjct: 84 LTQFNGMELTRDYVRNLVRRGSSKVMVIKDVTTKDGGKLRMEVLAIT---------TYRC 134
Query: 439 QHTQVRAIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKVK 618
T IRK + + + + SD + + A IYPLR V I K+K
Sbjct: 135 TRTHKHLIRKSIMDRLDKVGQESDFDSLVRDSIMGKIQVDLFNVAKKIYPLRKVEIIKIK 194
Query: 619 VLKRPR 636
VL+ PR
Sbjct: 195 VLEYPR 200
>UniRef50_Q0W2K9 Cluster: 30S ribosomal protein S3AE; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S3AE -
Uncultured methanogenic archaeon RC-I
Length = 225
Score = 44.0 bits (99), Expect = 0.004
Identities = 36/129 (27%), Positives = 61/129 (47%)
Frame = +1
Query: 265 NFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQH 444
+F G +LT D +R +VK+ + I+AN+ V T DG+ +RV I T K A+
Sbjct: 80 SFLGHELTRDYMRSLVKRRTSKIDANVVVTTKDGFKVRVKPIVLTVK---------RART 130
Query: 445 TQVRAIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKVKVL 624
+Q+ +IR+ M ++ + + + + IYPLR V I K +++
Sbjct: 131 SQIESIRQIMINVVNKRGAELGFTEFINEVVTGKVASEIYKNTKNIYPLRRVEIGKSELV 190
Query: 625 KRPRFEISK 651
RP +K
Sbjct: 191 YRPAVAAAK 199
Score = 39.1 bits (87), Expect = 0.12
Identities = 25/70 (35%), Positives = 35/70 (50%)
Frame = +2
Query: 20 KIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTD 199
K VD F K+WY V AP+ F++ +G TL + G I GRV E +L D+ D
Sbjct: 7 KKVDAFRAKNWYQVIAPAEFNRANIGETLAD-DPGKMI------GRVMESTLGDVTGDWT 59
Query: 200 AERSFRKFRL 229
+ FR+
Sbjct: 60 KQNIKMIFRI 69
>UniRef50_Q5V296 Cluster: 30S ribosomal protein S3Ae; n=4;
Halobacteriaceae|Rep: 30S ribosomal protein S3Ae -
Haloarcula marismortui (Halobacterium marismortui)
Length = 213
Score = 42.7 bits (96), Expect = 0.009
Identities = 35/118 (29%), Positives = 55/118 (46%)
Frame = +1
Query: 280 DLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRA 459
+LT D LR +V++ + +EA I V TTD Y +++ + T K A +Q +A
Sbjct: 83 ELTRDYLRSLVRRGSSKVEAYITVLTTDDYRVQIQPVAVTTKK---------ADASQEKA 133
Query: 460 IRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKVKVLKRP 633
IR+ M +++ + + S L A IYPLR V I+K + RP
Sbjct: 134 IRRTMIDLVRETAEDHTFEQLIDSVVEGRLSSAIYGEAKDIYPLRRVEIKKTTLEARP 191
>UniRef50_A7D401 Cluster: Ribosomal protein S3Ae; n=2;
Halorubrum|Rep: Ribosomal protein S3Ae - Halorubrum
lacusprofundi ATCC 49239
Length = 215
Score = 41.5 bits (93), Expect = 0.022
Identities = 36/118 (30%), Positives = 56/118 (47%)
Frame = +1
Query: 280 DLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRA 459
+LT D LR +V++ + +EA+I V TTD Y +RV + T K A +Q +A
Sbjct: 83 ELTRDYLRSLVRRGASKVEASITVLTTDDYRIRVQPVALTTKK---------ADRSQEKA 133
Query: 460 IRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKVKVLKRP 633
IR+ M + + + + + L A IYPLR V I+K+ + RP
Sbjct: 134 IRRVMIDKVHAAAEDRTFESFVDAIVEGNLSSAIYGDAKLIYPLRRVEIQKLTLEARP 191
>UniRef50_A4YCU2 Cluster: Ribosomal protein S3Ae; n=1;
Metallosphaera sedula DSM 5348|Rep: Ribosomal protein
S3Ae - Metallosphaera sedula DSM 5348
Length = 216
Score = 38.7 bits (86), Expect = 0.15
Identities = 35/129 (27%), Positives = 52/129 (40%), Gaps = 1/129 (0%)
Frame = +1
Query: 268 FHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQH- 444
F G +L+ D +R +V++ + I +D+ T DG+ LRV + T Y H
Sbjct: 87 FAGHELSRDYVRSLVRRKSSKINKVVDITTKDGFTLRVKTLAL----------TAYRVHR 136
Query: 445 TQVRAIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKVKVL 624
Q IRK M +++ + + L A I PLR I K KVL
Sbjct: 137 EQATTIRKIMEDVVKKTAEGKTFDEFVQEMIFGNLANNIFNEAKKIAPLRKAEIEKSKVL 196
Query: 625 KRPRFEISK 651
P + K
Sbjct: 197 FAPLIKEGK 205
>UniRef50_Q9YCV8 Cluster: 30S ribosomal protein S3Ae; n=12;
Archaea|Rep: 30S ribosomal protein S3Ae - Aeropyrum
pernix
Length = 214
Score = 37.9 bits (84), Expect = 0.27
Identities = 40/126 (31%), Positives = 55/126 (43%), Gaps = 4/126 (3%)
Frame = +1
Query: 268 FHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHT 447
F G +L D +R + ++ + + +V T DGY LRV + FT R+ C + +
Sbjct: 79 FKGHELLRDYIRGLTRRKSSKVTGIFNVWTKDGYGLRVTAMAFT-------RQRC--KTS 129
Query: 448 QVRAIRKKMCEIITRDVTNSDSGR----W*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKV 615
Q AIRK M EI+ + S S L A IYPLR V I K
Sbjct: 130 QKSAIRKVMQEIVEQKARESTLDELIQLMVFSDHEGSLAYLIDESARKIYPLRKVEIAKS 189
Query: 616 KVLKRP 633
K+L P
Sbjct: 190 KLLWVP 195
>UniRef50_Q87BL9 Cluster: DNA helicase; n=5; Xylella fastidiosa|Rep:
DNA helicase - Xylella fastidiosa (strain Temecula1 /
ATCC 700964)
Length = 1190
Score = 35.5 bits (78), Expect = 1.4
Identities = 31/131 (23%), Positives = 47/131 (35%)
Frame = +2
Query: 8 GVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 187
G++++ D W + + + Q T + A GL +VSLAD
Sbjct: 548 GMQRQCDDRLQEHSWAVTRGEKVLHEEQCHITTWQAALAKESALTGLMEAAGQVSLADCD 607
Query: 188 ADTDAERSFRKFRLIAEYVQGRMCSATSTAWTSQPISSGGWLKNGRLSSKPTLM*RQPMD 367
A D FR F L Y +GR S + G K G + +P R +
Sbjct: 608 ALADTSIRFRIFLLTTHYWEGRWLSEMQAQLPAD--LDGEKKKTGGTAVEPRWRRRMKLT 665
Query: 368 TFYVSSALVSP 400
VS+ + P
Sbjct: 666 PCIVSTLFMLP 676
>UniRef50_A4F9H9 Cluster: Putative uncharacterized protein; n=1;
Saccharopolyspora erythraea NRRL 2338|Rep: Putative
uncharacterized protein - Saccharopolyspora erythraea
(strain NRRL 23338)
Length = 414
Score = 35.5 bits (78), Expect = 1.4
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Frame = +2
Query: 173 LADLQADTDAERSFRK-FRLIAEYVQGRMCSATSTAWTSQ-PISSGGWLKNGRLSSKPTL 346
+ D++AD R++ + FR+ AE + G + + T TS P++S G+ K+GR ++PT+
Sbjct: 87 IGDMEADPVKARAWAEVFRMSAEEIPGFVSALTPEQLTSDTPVTSHGY-KDGRFDARPTV 145
Query: 347 M 349
+
Sbjct: 146 L 146
>UniRef50_Q3LW71 Cluster: Ribosomal protein S3a; n=1; Bigelowiella
natans|Rep: Ribosomal protein S3a - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 215
Score = 33.9 bits (74), Expect = 4.3
Identities = 20/86 (23%), Positives = 42/86 (48%)
Frame = +1
Query: 247 RTYVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRK 426
+ ++ F+G L+ D + MV K L+E +I + T V+ +F + +T +L
Sbjct: 91 KMFIRTTFNGFRLSYDFIFSMVLKPTKLVEFSIKINTLKKKVVEIFVL-YTITKNLHSNS 149
Query: 427 TCYAQHTQVRAIRKKMCEIITRDVTN 504
Y + +++R I ++ I + + N
Sbjct: 150 ITYGKRSRIRKINRESILCIKKMLEN 175
>UniRef50_Q5KZ52 Cluster: Hypothetical conserved protein; n=1;
Geobacillus kaustophilus|Rep: Hypothetical conserved
protein - Geobacillus kaustophilus
Length = 114
Score = 33.5 bits (73), Expect = 5.7
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = -2
Query: 697 RLPPCLHRFRREVPSTSRSRNGASST----LSPFGCKHRAEGRCPW 572
R P HRF R +P+ R+ +G S LSP G K EGR P+
Sbjct: 5 RQEPFRHRFGRPLPAELRTADGERSVYIHDLSPHGMKIETEGRLPF 50
>UniRef50_A5UKY8 Cluster: Small subunit ribosomal protein S3Ae; n=2;
Methanobacteriaceae|Rep: Small subunit ribosomal protein
S3Ae - Methanobrevibacter smithii (strain PS / ATCC
35061 / DSM 861)
Length = 193
Score = 33.5 bits (73), Expect = 5.7
Identities = 22/91 (24%), Positives = 40/91 (43%)
Frame = +2
Query: 2 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 181
K ++++ D + K WY +K P F +++G T + L GR EV++ +
Sbjct: 3 KAKARRRVRDTWKEKSWYTIKTPVNFEDKEIGETPAR-------DPDYLIGRGVEVTMRE 55
Query: 182 LQADTDAERSFRKFRLIAEYVQGRMCSATST 274
L D + + K R + V G + + T
Sbjct: 56 LSG--DFSKQYIKLRFEIDNVAGDVANTKFT 84
>UniRef50_Q119K9 Cluster: Putative uncharacterized protein precursor;
n=1; Trichodesmium erythraeum IMS101|Rep: Putative
uncharacterized protein precursor - Trichodesmium
erythraeum (strain IMS101)
Length = 2322
Score = 33.1 bits (72), Expect = 7.6
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -3
Query: 498 DVACNDFTHFLSDCSDLSVLGVARLALAQGVLIGET 391
+V NDF LSD ++S LG+A +A G+LI T
Sbjct: 2048 EVGLNDFQLMLSDRLEMSFLGIANFQVAGGLLINGT 2083
>UniRef50_A7S0H0 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 652
Score = 33.1 bits (72), Expect = 7.6
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Frame = +3
Query: 180 IYKLTLTR-KGLSANSD*SPNMCKDVCALQLPRHGPH------NR*AQVDG*KMADSH 332
++KLT+T KGL+ + + N+ KDV + R GP NR A++DG K +D H
Sbjct: 361 VFKLTVTDDKGLTGSGTVAVNVKKDVNQAPVARAGPDVVVHLPNRAAELDGSKSSDDH 418
>UniRef50_Q2TZP1 Cluster: Predicted RNA-binding protein homologous
to eukaryotic snRNP; n=13; Pezizomycotina|Rep: Predicted
RNA-binding protein homologous to eukaryotic snRNP -
Aspergillus oryzae
Length = 1103
Score = 33.1 bits (72), Expect = 7.6
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 248 GRMCSATSTAWTSQPISSGGWLKNGRLSSKPTLM*RQPMDTFYV 379
G +C ATS+AW S+ + S W++ +++ + PM F V
Sbjct: 615 GNLCVATSSAWDSKAVMSAWWVQASQITKTAEVGGLLPMGDFLV 658
>UniRef50_A0RTS7 Cluster: Ribosomal protein S3AE; n=2;
Thermoprotei|Rep: Ribosomal protein S3AE - Cenarchaeum
symbiosum
Length = 203
Score = 33.1 bits (72), Expect = 7.6
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = +1
Query: 268 FHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRK 426
F + + + LR +V++ + + +DVKT+DGYV R+ + T + + +K
Sbjct: 82 FKRYEYSKEYLRSLVRRGSSKVNYIVDVKTSDGYVFRLKVLALTYRHLNTSKK 134
>UniRef50_Q0KDB8 Cluster: L-Amino-acid oxidase; n=3; cellular
organisms|Rep: L-Amino-acid oxidase - Ralstonia eutropha
(strain ATCC 17699 / H16 / DSM 428 / Stanier
337)(Cupriavidus necator (strain ATCC 17699 / H16 / DSM
428 / Stanier337))
Length = 434
Score = 32.7 bits (71), Expect = 10.0
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 278 WTSQPISSGGWL--KNGRLSSKPTLM*RQPMDTFYVSSALVSPI 403
W + P S GGW+ + G L+ LM RQP + + A ++PI
Sbjct: 363 WANDPFSKGGWMHHRPGNLTQAAPLM-RQPHGRIHFAGADIAPI 405
>UniRef50_A6R232 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 1177
Score = 32.7 bits (71), Expect = 10.0
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 248 GRMCSATSTAWTSQPISSGGWLKNGRLSSKPT 343
G +C ATSTAW S+ + G W N SK T
Sbjct: 635 GNLCVATSTAWDSKAV-MGAWWANANQVSKTT 665
>UniRef50_A2SQ57 Cluster: Ribosomal protein S3Ae; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S3Ae - Methanocorpusculum labreanum (strain ATCC 43576 /
DSM 4855 / Z)
Length = 206
Score = 32.7 bits (71), Expect = 10.0
Identities = 21/77 (27%), Positives = 35/77 (45%)
Frame = +2
Query: 2 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 181
KK + V+ + K+WY V AP K+ +G + + E + GRV VSL +
Sbjct: 4 KKQSGGRKVEGWKAKNWYKVHAPEFLGKQFIGEIISSNP-------ENVPGRVLTVSLGE 56
Query: 182 LQADTDAERSFRKFRLI 232
L D + F+++
Sbjct: 57 LIQDYSKQNVRASFKIM 73
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 772,403,234
Number of Sequences: 1657284
Number of extensions: 16174004
Number of successful extensions: 47403
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 45475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47363
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62146450145
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -