Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30755
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 118 7e-28
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 117 2e-27
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida... 30 0.41
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 28 1.6
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 27 3.8
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 26 6.6
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 6.6
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 26 6.6
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 25 8.8
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo... 25 8.8
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb... 25 8.8
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 8.8
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 118 bits (285), Expect = 7e-28
Identities = 57/133 (42%), Positives = 86/133 (64%)
Frame = +1
Query: 259 LCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 438
L +F+G+ +T+DKLR +V+KWQT IEA+ +KTTDGY+ RVF IGFT + + +KT YA
Sbjct: 97 LTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTYA 156
Query: 439 QHTQVRAIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKVK 618
Q +Q+RAIR+KM ++I ++ + R R I+PL++V +RKVK
Sbjct: 157 QSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVK 216
Query: 619 VLKRPRFEISKLM 657
+LK P+ + KL+
Sbjct: 217 ILKAPKHDAQKLL 229
Score = 113 bits (271), Expect = 3e-26
Identities = 51/86 (59%), Positives = 66/86 (76%)
Frame = +2
Query: 2 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 181
KKG+KK++VDPF+RK+WYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLAD
Sbjct: 13 KKGIKKRVVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLAD 72
Query: 182 LQADTDAERSFRKFRLIAEYVQGRMC 259
LQ D E +FRK +L E +QG+ C
Sbjct: 73 LQ--KDEEHAFRKVKLRVEDIQGKSC 96
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 117 bits (282), Expect = 2e-27
Identities = 56/133 (42%), Positives = 83/133 (62%)
Frame = +1
Query: 259 LCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 438
L +F+G D+T+DKLR +V+KWQ+ IEAN +KTTDGY+ R+F IGFT++ +KT YA
Sbjct: 97 LTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTYA 156
Query: 439 QHTQVRAIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKVK 618
Q +Q+RAI +KM ++I + R + IYPL++V +RKVK
Sbjct: 157 QSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVK 216
Query: 619 VLKRPRFEISKLM 657
+LK P+ + KL+
Sbjct: 217 ILKAPKHDAQKLL 229
Score = 116 bits (278), Expect = 5e-27
Identities = 53/86 (61%), Positives = 66/86 (76%)
Frame = +2
Query: 2 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 181
KKG+KK++VDPF+RKDWYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLAD
Sbjct: 13 KKGIKKRVVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLAD 72
Query: 182 LQADTDAERSFRKFRLIAEYVQGRMC 259
LQ D E SFRK +L E +QG+ C
Sbjct: 73 LQ--KDEEHSFRKVKLRVEDIQGKSC 96
>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 494
Score = 29.9 bits (64), Expect = 0.41
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 534 IPDSIAKDIEKACHGHLPSA 593
IP IAK+I K +GHLPS+
Sbjct: 234 IPQEIAKEITKELYGHLPSS 253
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -2
Query: 658 PSTSRSRNGASSTLSPFGCKHRAE 587
PSTSR RN S LS KHRA+
Sbjct: 736 PSTSRERNNNISELSNSRTKHRAK 759
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 238 ICARTYVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGY 369
IC YVL NF D +K R + ++ ++N ++ T +GY
Sbjct: 95 ICEAIYVLQNFESTDFNKEKERLVSIILESNNKSNNELITKNGY 138
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 256 VLCNFHGMDLTTDKLRWMV--KKWQTLIEANIDVKTT 360
V C H MDL + LR +V ++ L+E + D++TT
Sbjct: 117 VFCLIHKMDLVQEDLRDLVFEERKAILLETSKDLETT 153
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 384 LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKENV 476
LHW+ L+ +Q + P H+GQ S + NV
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNV 1194
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -3
Query: 279 HAVEVAEHIRPCTYSAINLNLRKDLSASVSACRSARETSKTL 154
H +EV +RP TY + + D+ + + + R E S L
Sbjct: 260 HCLEVNSDLRPTTYQLLRSPILSDIRSKLESERVVLEQSDLL 301
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +1
Query: 301 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 438
++ W L+ T GYV+R GFT+ ++ + K +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840
>SPAC7D4.06c |alg3||dolichol-P-Man dependent
alpha|Schizosaccharomyces pombe|chr 1|||Manual
Length = 406
Score = 25.4 bits (53), Expect = 8.8
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = -1
Query: 512 ESELVTSRVMISHIFFLIALT*VCW----A*HVLRWLKESLLVKPMQKTRRTYPSVVFTS 345
ES ++ ++ H+ L+A T W + L +KP+ K + P+ +FT+
Sbjct: 263 ESTSFSTSILFLHVALLVAFTCKHWNKLSRATPFAMVNSMLTLKPLPKLQLATPNFIFTA 322
Query: 344 MLAS 333
+ S
Sbjct: 323 LATS 326
>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 591 ARCLHPKGESVEEAPFRDLEVD 656
+RCL ++V+EA RDLE++
Sbjct: 22 SRCLGFAAQNVDEANLRDLEIE 43
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 280 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 378
D T D +RWM K Q + N+D K + G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,157,210
Number of Sequences: 5004
Number of extensions: 66651
Number of successful extensions: 212
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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