Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30755
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 144 9e-35
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 141 5e-34
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 141 5e-34
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 29 5.2
06_03_0290 - 19193707-19193752,19193822-19194090 29 5.2
02_04_0307 - 21905897-21906490,21906581-21906722,21907116-219072... 29 5.2
05_06_0094 + 25477367-25477398,25477516-25477891,25478292-254783... 28 9.2
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397... 28 9.2
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 144 bits (348), Expect = 9e-35
Identities = 67/134 (50%), Positives = 93/134 (69%)
Frame = +1
Query: 256 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 435
VL NF GM TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+FCIGFT + ++TCY
Sbjct: 96 VLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCY 155
Query: 436 AQHTQVRAIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKV 615
AQ +Q+R IR+KM EI+ ++ D + + + + I+PL++V +RKV
Sbjct: 156 AQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKV 215
Query: 616 KVLKRPRFEISKLM 657
K+LK P+F++ KLM
Sbjct: 216 KILKAPKFDLGKLM 229
Score = 123 bits (296), Expect = 2e-28
Identities = 60/84 (71%), Positives = 70/84 (83%)
Frame = +2
Query: 2 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 181
KKG KKK VDPF +KDWYD+KAPS+F+ R +G TLV+RTQGTKIASEGLK RVFEVSLAD
Sbjct: 13 KKGSKKKTVDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLAD 72
Query: 182 LQADTDAERSFRKFRLIAEYVQGR 253
LQ D D +++RK RL AE VQG+
Sbjct: 73 LQNDED--QAYRKIRLRAEDVQGK 94
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 141 bits (342), Expect = 5e-34
Identities = 66/134 (49%), Positives = 92/134 (68%)
Frame = +1
Query: 256 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 435
VL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++TCY
Sbjct: 96 VLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCY 155
Query: 436 AQHTQVRAIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKV 615
AQ +Q+R IR+KM EI+ ++ D + + + + I+PL++V +RKV
Sbjct: 156 AQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKV 215
Query: 616 KVLKRPRFEISKLM 657
K+LK P+F++ KLM
Sbjct: 216 KILKAPKFDLGKLM 229
Score = 123 bits (297), Expect = 1e-28
Identities = 61/84 (72%), Positives = 70/84 (83%)
Frame = +2
Query: 2 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 181
KKG KKK VDPF +KDWYD+KAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLAD
Sbjct: 13 KKGSKKKTVDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLAD 72
Query: 182 LQADTDAERSFRKFRLIAEYVQGR 253
LQ D D +++RK RL AE VQG+
Sbjct: 73 LQNDED--QAYRKIRLRAEDVQGK 94
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 141 bits (342), Expect = 5e-34
Identities = 67/134 (50%), Positives = 91/134 (67%)
Frame = +1
Query: 256 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 435
VL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++TCY
Sbjct: 96 VLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCY 155
Query: 436 AQHTQVRAIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKV 615
AQ +Q+R IR+KM EI+ + D + + + + I+PL++V IRKV
Sbjct: 156 AQASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKSTSSIFPLQNVFIRKV 215
Query: 616 KVLKRPRFEISKLM 657
K+LK P+F++ KLM
Sbjct: 216 KILKAPKFDLGKLM 229
Score = 123 bits (296), Expect = 2e-28
Identities = 60/84 (71%), Positives = 71/84 (84%)
Frame = +2
Query: 2 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 181
+KG KKK VDPF++KDWYD+KAP++FS R +G TLV+RTQGTKIASEGLK RVFEVSLAD
Sbjct: 13 RKGSKKKTVDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLAD 72
Query: 182 LQADTDAERSFRKFRLIAEYVQGR 253
LQ D D +++RK RL AE VQGR
Sbjct: 73 LQNDED--QAYRKVRLRAEDVQGR 94
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = -3
Query: 684 ASTAFAVKFHQLRDLETGPLQHFHLSDANIAQRVDAHGRPSRCPWQWSQESTCSPPP 514
A TA A Q D + PL L ANI +R RP P + ++ PPP
Sbjct: 560 APTANAESSDQPSDNQNNPLVVTQLKLANIEKRAPRVPRPPPAPSATANTASALPPP 616
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.7 bits (61), Expect = 5.2
Identities = 23/76 (30%), Positives = 31/76 (40%)
Frame = +2
Query: 122 GTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRMCSATSTAWTSQPISS 301
GT AS GL G + + + SF R+ A G S A T P S
Sbjct: 30 GTPAASRGLPGWP---GFCGVGCGSSSSSSFAPPRMQARRAAG------SAARTRSPSQS 80
Query: 302 GGWLKNGRLSSKPTLM 349
GW+ G S+ P+L+
Sbjct: 81 NGWITGGSASAMPSLV 96
>02_04_0307 -
21905897-21906490,21906581-21906722,21907116-21907247,
21907303-21907433,21908028-21908185,21908299-21908396,
21908511-21908631,21908748-21908965,21909230-21909429
Length = 597
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 217 QIQINRRICARTYVLCNFHGMDLTTDKLRWMVKK 318
++ ++ R CA + L HG D+T+D + V++
Sbjct: 188 ELMLDMRTCAMAFRLLRMHGYDITSDGMAQFVEQ 221
>05_06_0094 +
25477367-25477398,25477516-25477891,25478292-25478315,
25479069-25481828
Length = 1063
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -2
Query: 679 HRFRREVPSTSRSRNGASSTLSPFGCKHRAEGRCPWQAFS 560
H R E PST R+ NG S F AE RC ++S
Sbjct: 691 HGTRVEPPSTLRNSNGGVEHPSRFSSVPEAELRCGLDSYS 730
>03_05_0791 +
27736978-27737217,27737648-27739191,27739512-27739763,
27739844-27739954,27740042-27740102,27740373-27740558
Length = 797
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 169 NFENSSLQSFRSNFRSLGTVDKRGADLPLAE 77
+FENS LQSF +L + K+G P E
Sbjct: 216 SFENSELQSFTDKIENLSSSQKKGYFKPKRE 246
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,406,554
Number of Sequences: 37544
Number of extensions: 469137
Number of successful extensions: 1400
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1391
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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