BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30755 (752 letters) Database: fruitfly 53,049 sequences; 24,988,368 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF034971-1|AAC62117.1| 268|Drosophila melanogaster ribosomal pr... 174 1e-43 AE014135-5|AAN06541.1| 218|Drosophila melanogaster CG2168-PB, i... 174 1e-43 AE014135-4|AAF59372.1| 268|Drosophila melanogaster CG2168-PA, i... 174 1e-43 Y10115-1|CAA71201.1| 270|Drosophila melanogaster ribosomal prot... 168 8e-42 AE014135-6|AAN06542.1| 163|Drosophila melanogaster CG2168-PD, i... 157 2e-38 AY070949-1|AAL48571.1| 217|Drosophila melanogaster RE04220p pro... 140 2e-33 >AF034971-1|AAC62117.1| 268|Drosophila melanogaster ribosomal protein S3a protein. Length = 268 Score = 174 bits (423), Expect = 1e-43 Identities = 83/134 (61%), Positives = 100/134 (74%) Frame = +1 Query: 256 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 435 VLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCY Sbjct: 99 VLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCY 158 Query: 436 AQHTQVRAIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKV 615 AQ +QVR IR +M +IIT +V+ +D + L + + + IYPL DV IRKV Sbjct: 159 AQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKV 218 Query: 616 KVLKRPRFEISKLM 657 KVLK+PRF++SKL+ Sbjct: 219 KVLKKPRFDVSKLL 232 Score = 140 bits (339), Expect = 2e-33 Identities = 67/84 (79%), Positives = 73/84 (86%) Frame = +2 Query: 2 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 181 KKG KKK+VDPF+RKDWYDVKAP+MF RQ+G TLVNRTQG +IAS+ LKGRVFEVSLAD Sbjct: 14 KKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLAD 73 Query: 182 LQADTDAERSFRKFRLIAEYVQGR 253 LQ D D ERSFRKFRLIAE VQ R Sbjct: 74 LQKDIDPERSFRKFRLIAEDVQDR 97 >AE014135-5|AAN06541.1| 218|Drosophila melanogaster CG2168-PB, isoform B protein. Length = 218 Score = 174 bits (423), Expect = 1e-43 Identities = 83/134 (61%), Positives = 100/134 (74%) Frame = +1 Query: 256 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 435 VLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCY Sbjct: 49 VLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCY 108 Query: 436 AQHTQVRAIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKV 615 AQ +QVR IR +M +IIT +V+ +D + L + + + IYPL DV IRKV Sbjct: 109 AQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKV 168 Query: 616 KVLKRPRFEISKLM 657 KVLK+PRF++SKL+ Sbjct: 169 KVLKKPRFDVSKLL 182 Score = 58.0 bits (134), Expect = 1e-08 Identities = 29/34 (85%), Positives = 29/34 (85%) Frame = +2 Query: 152 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGR 253 GRVFEVSLADLQ D D ERSFRKFRLIAE VQ R Sbjct: 14 GRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDR 47 >AE014135-4|AAF59372.1| 268|Drosophila melanogaster CG2168-PA, isoform A protein. Length = 268 Score = 174 bits (423), Expect = 1e-43 Identities = 83/134 (61%), Positives = 100/134 (74%) Frame = +1 Query: 256 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 435 VLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCY Sbjct: 99 VLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCY 158 Query: 436 AQHTQVRAIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKV 615 AQ +QVR IR +M +IIT +V+ +D + L + + + IYPL DV IRKV Sbjct: 159 AQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKV 218 Query: 616 KVLKRPRFEISKLM 657 KVLK+PRF++SKL+ Sbjct: 219 KVLKKPRFDVSKLL 232 Score = 140 bits (339), Expect = 2e-33 Identities = 67/84 (79%), Positives = 73/84 (86%) Frame = +2 Query: 2 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 181 KKG KKK+VDPF+RKDWYDVKAP+MF RQ+G TLVNRTQG +IAS+ LKGRVFEVSLAD Sbjct: 14 KKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLAD 73 Query: 182 LQADTDAERSFRKFRLIAEYVQGR 253 LQ D D ERSFRKFRLIAE VQ R Sbjct: 74 LQKDIDPERSFRKFRLIAEDVQDR 97 >Y10115-1|CAA71201.1| 270|Drosophila melanogaster ribosomal protein S3a protein. Length = 270 Score = 168 bits (408), Expect = 8e-42 Identities = 82/135 (60%), Positives = 99/135 (73%), Gaps = 1/135 (0%) Frame = +1 Query: 256 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 435 VLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCY Sbjct: 100 VLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCY 159 Query: 436 AQHTQVRAIRK-KMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRK 612 A +QVR IR +M +IIT +V+ +D + L + + + IYPL DV IRK Sbjct: 160 AHESQVRKIRSGRMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRK 219 Query: 613 VKVLKRPRFEISKLM 657 VKVLK+PRF++SKL+ Sbjct: 220 VKVLKKPRFDVSKLL 234 Score = 130 bits (315), Expect = 2e-30 Identities = 64/85 (75%), Positives = 70/85 (82%), Gaps = 1/85 (1%) Frame = +2 Query: 2 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLA- 178 KKG KKK+VDPF+RKDWYDVKAP+MF RQ+G TLVNRTQG +IAS+ KGRVFEVSL Sbjct: 14 KKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYFKGRVFEVSLVP 73 Query: 179 DLQADTDAERSFRKFRLIAEYVQGR 253 DLQ D D E SFRKFRLIAE VQ R Sbjct: 74 DLQKDIDPEHSFRKFRLIAEDVQDR 98 >AE014135-6|AAN06542.1| 163|Drosophila melanogaster CG2168-PD, isoform D protein. Length = 163 Score = 157 bits (380), Expect = 2e-38 Identities = 76/127 (59%), Positives = 93/127 (73%) Frame = +1 Query: 277 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVR 456 MDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCYAQ +QVR Sbjct: 1 MDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVR 60 Query: 457 AIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKVKVLKRPR 636 IR +M +IIT +V+ +D + L + + + IYPL DV IRKVKVLK+PR Sbjct: 61 KIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPR 120 Query: 637 FEISKLM 657 F++SKL+ Sbjct: 121 FDVSKLL 127 >AY070949-1|AAL48571.1| 217|Drosophila melanogaster RE04220p protein. Length = 217 Score = 140 bits (339), Expect = 2e-33 Identities = 67/84 (79%), Positives = 73/84 (86%) Frame = +2 Query: 2 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 181 KKG KKK+VDPF+RKDWYDVKAP+MF RQ+G TLVNRTQG +IAS+ LKGRVFEVSLAD Sbjct: 14 KKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLAD 73 Query: 182 LQADTDAERSFRKFRLIAEYVQGR 253 LQ D D ERSFRKFRLIAE VQ R Sbjct: 74 LQKDIDPERSFRKFRLIAEDVQDR 97 Score = 138 bits (335), Expect = 6e-33 Identities = 67/104 (64%), Positives = 80/104 (76%) Frame = +1 Query: 256 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 435 VLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCY Sbjct: 99 VLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCY 158 Query: 436 AQHTQVRAIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRR 567 AQ +QVR IR +M +IIT +V+ +D + TS T L + S++ Sbjct: 159 AQQSQVRKIRARMTDIITNEVSGADLKQLLTSWPWTRLRKISKK 202 Database: fruitfly Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 24,988,368 Number of sequences in database: 53,049 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 35,030,794 Number of Sequences: 53049 Number of extensions: 773262 Number of successful extensions: 2618 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 2425 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2611 length of database: 24,988,368 effective HSP length: 83 effective length of database: 20,585,301 effective search space used: 3437745267 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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