Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30755
         (752 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)           150   1e-36
At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...   150   1e-36
At3g17380.1 68416.m02221 meprin and TRAF homology domain-contain...    32   0.47 
At2g46530.1 68415.m05802 transcriptional factor B3 family protei...    31   0.62 
At3g52640.1 68416.m05799 nicastrin-related contains weak similar...    30   1.4  
At1g54570.1 68414.m06223 esterase/lipase/thioesterase family pro...    29   3.3  
At5g42470.1 68418.m05170 expressed protein low similarity to BRE...    28   5.8  
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    28   7.7  

>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score =  150 bits (363), Expect = 1e-36
 Identities = 70/134 (52%), Positives = 94/134 (70%)
 Frame = +1

Query: 256 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 435
           VL  F GMD TTDKLR +VKKWQTLIEA++DVKTTDGY LR+FCI FT + +   ++TCY
Sbjct: 96  VLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCY 155

Query: 436 AQHTQVRAIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKV 615
           AQ +Q+R IR+KM EI+ ++ ++ D            + R   +   GIYPL++V IRKV
Sbjct: 156 AQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKV 215

Query: 616 KVLKRPRFEISKLM 657
           K+LK P+F++ KLM
Sbjct: 216 KILKAPKFDLGKLM 229



 Score =  122 bits (293), Expect = 3e-28
 Identities = 61/84 (72%), Positives = 68/84 (80%)
 Frame = +2

Query: 2   KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 181
           +KG KKK VDPF++KDWYDVKAP  F+ R VG TLV+RTQGTKIASEGLK RVFEVSLAD
Sbjct: 13  RKGGKKKAVDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLAD 72

Query: 182 LQADTDAERSFRKFRLIAEYVQGR 253
           LQ D D   ++RK RL AE VQGR
Sbjct: 73  LQNDED--NAYRKIRLRAEDVQGR 94


>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score =  150 bits (363), Expect = 1e-36
 Identities = 70/134 (52%), Positives = 94/134 (70%)
 Frame = +1

Query: 256 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 435
           VLC F GMD TTDKLR +VKKWQTLIEA++DVKTTD Y LR+FCI FT + +   ++TCY
Sbjct: 96  VLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCIAFTKRRANQVKRTCY 155

Query: 436 AQHTQVRAIRKKMCEIITRDVTNSDSGRW*TS*FLTPLPRTSRRPAMGIYPLRDVCIRKV 615
           AQ +Q+R IR+KM +I+ R+ ++ D            + R   +   GIYPL++V IRKV
Sbjct: 156 AQSSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKV 215

Query: 616 KVLKRPRFEISKLM 657
           K+LK P+F++ KLM
Sbjct: 216 KILKAPKFDLGKLM 229



 Score =  125 bits (302), Expect = 3e-29
 Identities = 65/102 (63%), Positives = 77/102 (75%), Gaps = 2/102 (1%)
 Frame = +2

Query: 2   KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 181
           +KG KKK VDPF++KDWYDVKAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLAD
Sbjct: 13  RKGGKKKAVDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLAD 72

Query: 182 LQADTDAERSFRKFRLIAEYVQGR--MCSATSTAWTSQPISS 301
           LQ D D   ++RK RL AE VQGR  +C      +T+  + S
Sbjct: 73  LQGDED--NAYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRS 112


>At3g17380.1 68416.m02221 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 309

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 167 VSLADLQADTDAERSFRKFRL-IAEYVQGRMCSATSTAWTSQPISSGGWLK 316
           ++L D +  +D  + F +F + I + +QGR  +   T W S+  S  GW+K
Sbjct: 224 LTLVDPETISDGTKIFVEFTIRIFDQLQGRHIAGKVTKWFSRSSSEHGWVK 274


>At2g46530.1 68415.m05802 transcriptional factor B3 family protein /
           auxin-responsive factor AUX/IAA-related contains Pfam
           profiles: PF02309 AUX/IAA family, PF02362 B3 DNA binding
           domain
          Length = 601

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -3

Query: 333 DESLPFFNHPPELIGCEVHAVEV-AEHIRPCTYSAINLNLRKDLSASVS 190
           D+ +P FN PP+++ C V +V + AEH     Y+ I L   +D S   S
Sbjct: 61  DQEIPVFNLPPKIL-CRVLSVTLKAEHETDEVYAQITLQPEEDQSEPTS 108


>At3g52640.1 68416.m05799 nicastrin-related contains weak similarity
           to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
           sapiens]
          Length = 676

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = -3

Query: 486 NDFTH-FLSDCSDLSVLGVARLA--LAQGVLIGETNAEDT*NVSIGCLHINVGFDESL 322
           N F H  L D S+++   V   A  +A+ + I  ++ +DT N ++G +H+N  F E L
Sbjct: 430 NKFYHSHLDDLSNINSSSVVAAASVVARTLYILASDNKDTSNSALGSIHVNASFVEEL 487


>At1g54570.1 68414.m06223 esterase/lipase/thioesterase family
           protein contains Interpro entry IPR000379
          Length = 704

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 702 VSGFPLASTAFAVKFHQLRDLETGPLQHFHLSDANIAQRVDAH 574
           ++G P       V +H L  LE GP+    + + NI  R  AH
Sbjct: 438 LAGVPDKGPVLLVGYHMLMGLELGPMSEAFIKEKNILFRGMAH 480


>At5g42470.1 68418.m05170 expressed protein low similarity to BRE
           alpha b isoform [Homo sapiens] GI:16326573
          Length = 382

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -3

Query: 318 FFNHPPELIGCEVHAVEVAEHIRPCTYSAINLNLRKDLSASVSACRSA 175
           +  H  E +  ++H    A  +R     A++LNL + L A  + CR A
Sbjct: 247 YLPHLEETLERQIHEAVAAIDLRRSFIEALSLNLGRPLEADPTFCRKA 294


>At2g17930.1 68415.m02076 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF02259 FAT domain, PF00454
            Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
            domain
          Length = 3795

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -2

Query: 157  SSLQSFRSNFRSLGTVDKRGADLPLAEHRRSLDIVPIFASEWVDNLLLN 11
            S LQS RS F +L  + K  A +   ++ + L++V +  S+W+    LN
Sbjct: 1576 SWLQSNRSVFDTLVLIWKSPARISRLQNEQELNLVQVKESKWLVKCFLN 1624


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,909,482
Number of Sequences: 28952
Number of extensions: 366943
Number of successful extensions: 1090
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)