Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30753
(729 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 180 2e-46
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 179 3e-46
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 179 3e-46
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 97 2e-21
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 94 2e-20
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 73 4e-14
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 37 0.003
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.008
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.008
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 34 0.018
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 33 0.032
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 31 0.17
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 31 0.22
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 30 0.39
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.51
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 28 1.2
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 28 1.2
SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase |Schizosaccharo... 28 1.2
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 27 2.7
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 26 4.8
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 26 6.3
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 6.3
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 25 8.4
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 25 8.4
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 25 8.4
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 25 8.4
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 180 bits (437), Expect = 2e-46
Identities = 89/141 (63%), Positives = 104/141 (73%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
IDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+GQ
Sbjct: 73 IDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQ 132
Query: 435 TREHALLAFTLGVKQLIVGVNKMDSLNHHTVSPDLRKSRRKYPHTSRRLATTQLLSLSCP 614
TREHALLA+TLGVKQLIV VNKMD+ + ++ + +++ P
Sbjct: 133 TREHALLAYTLGVKQLIVAVNKMDTTGWSQAR--FEEIVKETSNFIKKVGFNPKTVPFVP 190
Query: 615 FSGWHGDNMLEPSTKMPLVQG 677
SG+ GDNM+EP+T MP QG
Sbjct: 191 VSGFQGDNMIEPTTNMPWYQG 211
Score = 141 bits (341), Expect = 1e-34
Identities = 64/68 (94%), Positives = 66/68 (97%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 220
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 221 DKLKAERE 244
DKLKAERE
Sbjct: 61 DKLKAERE 68
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 179 bits (436), Expect = 3e-46
Identities = 88/141 (62%), Positives = 104/141 (73%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
IDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQ
Sbjct: 73 IDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQ 132
Query: 435 TREHALLAFTLGVKQLIVGVNKMDSLNHHTVSPDLRKSRRKYPHTSRRLATTQLLSLSCP 614
TREHALLA+TLGVKQLIV VNKMD+ + ++ + +++ P
Sbjct: 133 TREHALLAYTLGVKQLIVAVNKMDTTGWSQAR--FEEIVKETSNFIKKVGFNPKTVPFVP 190
Query: 615 FSGWHGDNMLEPSTKMPLVQG 677
SG+ GDNM+EP+T MP QG
Sbjct: 191 VSGFQGDNMIEPTTNMPWYQG 211
Score = 141 bits (341), Expect = 1e-34
Identities = 64/68 (94%), Positives = 66/68 (97%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 220
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 221 DKLKAERE 244
DKLKAERE
Sbjct: 61 DKLKAERE 68
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 179 bits (436), Expect = 3e-46
Identities = 88/141 (62%), Positives = 104/141 (73%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
IDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQ
Sbjct: 73 IDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQ 132
Query: 435 TREHALLAFTLGVKQLIVGVNKMDSLNHHTVSPDLRKSRRKYPHTSRRLATTQLLSLSCP 614
TREHALLA+TLGVKQLIV VNKMD+ + ++ + +++ P
Sbjct: 133 TREHALLAYTLGVKQLIVAVNKMDTTGWSQAR--FEEIVKETSNFIKKVGFNPKTVPFVP 190
Query: 615 FSGWHGDNMLEPSTKMPLVQG 677
SG+ GDNM+EP+T MP QG
Sbjct: 191 VSGFQGDNMIEPTTNMPWYQG 211
Score = 141 bits (341), Expect = 1e-34
Identities = 64/68 (94%), Positives = 66/68 (97%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 220
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 221 DKLKAERE 244
DKLKAERE
Sbjct: 61 DKLKAERE 68
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 97.1 bits (231), Expect = 2e-21
Identities = 42/84 (50%), Positives = 59/84 (70%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG + GQ
Sbjct: 304 VEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQ 363
Query: 435 TREHALLAFTLGVKQLIVGVNKMD 506
TREHA+LA T G+ L+V +NKMD
Sbjct: 364 TREHAVLARTQGINHLVVVINKMD 387
Score = 80.6 bits (190), Expect = 2e-16
Identities = 35/64 (54%), Positives = 47/64 (73%)
Frame = +2
Query: 53 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 232
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 233 AERE 244
ERE
Sbjct: 296 EERE 299
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 93.9 bits (223), Expect = 2e-20
Identities = 44/87 (50%), Positives = 57/87 (65%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE G +NGQ
Sbjct: 243 MDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQ 302
Query: 435 TREHALLAFTLGVKQLIVGVNKMDSLN 515
TREHA L LG+ +++V VNK+D ++
Sbjct: 303 TREHAYLLRALGISEIVVSVNKLDLMS 329
Score = 72.5 bits (170), Expect = 6e-14
Identities = 31/63 (49%), Positives = 44/63 (69%)
Frame = +2
Query: 53 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 232
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 233 AER 241
ER
Sbjct: 235 EER 237
Score = 34.3 bits (75), Expect = 0.018
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +2
Query: 521 YSEPRFEEIKKEVSSY-IKKIGYNPAAVAFVPI 616
+SE RF+EIK VS + IK +G+ + V FVPI
Sbjct: 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPI 362
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 72.9 bits (171), Expect = 4e-14
Identities = 35/78 (44%), Positives = 52/78 (66%)
Frame = +3
Query: 273 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 452
++ET+ + +D PGH D+IKNMITG + D A+++V+A G+ QTREH L
Sbjct: 110 EYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP-------QTREHLL 162
Query: 453 LAFTLGVKQLIVGVNKMD 506
LA +GVKQ++V +NK+D
Sbjct: 163 LARQVGVKQIVVYINKVD 180
Score = 35.1 bits (77), Expect = 0.010
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +2
Query: 47 KEKTHINIVVIGHVDSGKSTTTGHLIYKC 133
++K H+NI IGHVD GK+T T I KC
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +3
Query: 294 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 473
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 474 KQLIVGVNKMD 506
K +I+ NK+D
Sbjct: 163 KHIIILQNKVD 173
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 136
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 291 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 386
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 136
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 291 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 386
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.3 bits (75), Expect = 0.018
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +3
Query: 276 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 446
FE S Y + IID PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
Score = 29.1 bits (62), Expect = 0.68
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCGGI 142
NI + H+DSGK+T T ++Y G I
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI 86
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.5 bits (73), Expect = 0.032
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 276 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 215 FDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 31.1 bits (67), Expect = 0.17
Identities = 23/74 (31%), Positives = 37/74 (50%)
Frame = +3
Query: 291 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG 470
Y + +ID+PGH DF + + + D A ++V A G I+ Q A+
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEGVCSQTITVLRQ-------AWIDR 146
Query: 471 VKQLIVGVNKMDSL 512
+K ++V +NKMD L
Sbjct: 147 IKVILV-INKMDRL 159
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 30.7 bits (66), Expect = 0.22
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +3
Query: 267 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 116 IYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 29.9 bits (64), Expect = 0.39
Identities = 26/84 (30%), Positives = 38/84 (45%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
I+ A F + +ID PGH DF + + D AV I+ + AG+ Q
Sbjct: 81 INSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAII-----DGSAGV--EAQ 133
Query: 435 TREHALLAFTLGVKQLIVGVNKMD 506
T+ A G+ ++I VNKMD
Sbjct: 134 TKVVWKQATKRGIPKVIF-VNKMD 156
Score = 28.7 bits (61), Expect = 0.90
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCG 136
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.51
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 303 IIDAPGHRDFIKNMITGTSQADCAVLIV 386
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +3
Query: 234 LSVSRYHIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 386
+S+ + +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 190 MSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 528 SPDLRKSRRKYPHTSRRLATTQLLSLSCPFSGWHGDNMLEPSTKMPLVQ 674
S + KS++ + + T QLL L+C + +H DNML K +V+
Sbjct: 1601 SQSVFKSKKHHLKSIVVKCTLQLLMLNCLWELFHSDNMLTNIPKRKMVK 1649
>SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 539 EEIKKEVSSYIKKIGYNPAAVAFVPIFW 622
EE++K V Y KK G + + VP FW
Sbjct: 162 EELEKRVEEYKKKFGEDESVPVPVPDFW 189
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 27.1 bits (57), Expect = 2.7
Identities = 19/62 (30%), Positives = 24/62 (38%)
Frame = -2
Query: 284 SFELPESNIDVIPTHAQPLVCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWW 105
S L N D + V +PK I I++ F P S S C+Y S D W
Sbjct: 12 SSNLRRMNRDHSSNNTNRTVLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSW 71
Query: 104 WT 99
T
Sbjct: 72 RT 73
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 26.2 bits (55), Expect = 4.8
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -2
Query: 263 NIDVIPTHAQPLVCPIPKH 207
N+D++ HA P++C + H
Sbjct: 531 NVDLLHLHAYPVICSVSSH 549
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 146 KRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERESVSHRY 262
+R IEKFEK +E + + ++KL E +S RY
Sbjct: 577 EREIEKFEKTIRENEESISLFKEEVEKLTDEITQLSERY 615
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 6.3
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +3
Query: 366 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSLNHHTVSPDLRK 545
D L V+ G +NGQ EH+L LGV +I + DS + + K
Sbjct: 581 DGGTLYVSTNNGYVLMFNFQNGQVIEHSLRRNQLGVAPII--LKHFDSKEKNAIFALGEK 638
Query: 546 SRRKYPHTSRRLAT----TQLLSLSCPFSGWHGDNML 644
+ Y + + + T T++L++S + G NML
Sbjct: 639 PQLMYYESDKLVITPLSCTEMLNISSYVNPSLGVNML 675
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +3
Query: 522 TVSPDLRKSRRKYPHTSRRLATTQLLSLSC 611
+ +PD+ ++PHT +R +T + L + C
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRC 174
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +3
Query: 255 IDIALWKFETSKYYV--TIIDAPGHRDFIKN 341
I+I + E +++ T+ID PG DFI N
Sbjct: 73 IEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.4 bits (53), Expect = 8.4
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Frame = +3
Query: 453 LAFTLGVKQLIVGVNKMDSLNHHTVS-PDLRKSRRKY---PHTSRRLATTQLLSLSCPFS 620
L T+ +++ V K ++ ++ +L ++ +K PH RL ++L LS PF
Sbjct: 635 LLITMNCLRVLEKVCKYSNIRKEIIARSNLHENLKKLLAIPHDKLRLYALKVLKLSVPFL 694
Query: 621 G--WHGDNM 641
G W NM
Sbjct: 695 GLKWKQANM 703
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1317
Score = 25.4 bits (53), Expect = 8.4
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = -1
Query: 669 PRAFWLKAPTCCLRAIQKMGTKATAAGL*PIFLMYEDTSFLISSNLGSLYGGSV 508
P A A CLR + L PI ++ D FL S ++ GG+V
Sbjct: 1037 PEAVTYSAIIYCLRVLISENIPLNQGCLLPIKVIIPDNCFLKPSETAAVVGGNV 1090
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,123,382
Number of Sequences: 5004
Number of extensions: 67028
Number of successful extensions: 261
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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