Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30752
         (822 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       24   1.7  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    23   3.9  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   5.1  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   6.8  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   8.9  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 192 YRTLLKRFPSSKSISQTARSQRAHQ 118
           YRT+ KR  S     +T  S R HQ
Sbjct: 162 YRTIKKRLRSCDLCQKTKSSNRPHQ 186


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +2

Query: 320 NFVFLDNDFTLLPAFRTTLQKDFGASIKVLDFSDPNSARIANT 448
           NF+     F+L PA      +DF AS+    F      R  NT
Sbjct: 307 NFLKRHTGFSLRPAAGLLTARDFLASLAFRIFQSTQYVRHKNT 349


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 256 PSISVAGFLGKINALLSCL 200
           PSI V G+ G+   ++SC+
Sbjct: 103 PSIQVMGYQGRAVVVVSCV 121


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 615 NRQRKHDVPEGAVPV 659
           N+Q   ++P GA+PV
Sbjct: 233 NKQHNFNLPPGAIPV 247


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 176 SDSRHQSPYPKRRDHNVPISLSL 108
           SD+R   PYP+   ++   SLSL
Sbjct: 30  SDTRPMLPYPQNYINSYLFSLSL 52


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,253
Number of Sequences: 336
Number of extensions: 4166
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22517873
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)