Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30752
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    30   0.35 
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom...    27   3.2  
SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c...    27   4.3  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    26   7.4  
SPAC22H12.01c |mug35|SPAC23G3.13c|sequence orphan|Schizosaccharo...    26   7.4  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    25   9.8  
SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr 2...    25   9.8  

>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 22/58 (37%), Positives = 30/58 (51%)
 Frame = -3

Query: 805 LEIDICESSCTWSAIFVLGLREYDQHRVLSVGAVRKVPVRRL*ASLGLRTGTAPSGTS 632
           L +D     CT+ AIFV  L  + +   L VG V +     + AS+G R  T P+GTS
Sbjct: 307 LILDAVNFGCTFGAIFV--LEYFGRRGPLIVGGVWQSICFFIYASVGDRALTRPNGTS 362


>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 513 SCSWKSSERRTFETRPP 463
           S +WK  + +TFET+PP
Sbjct: 355 STNWKDVKSKTFETKPP 371


>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 429

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +3

Query: 45  YCDVDFSERPRNFSIELLYHTQTQTDGHVVISPFGIWTLMTGIALGASGNSYRQLSRAFI 224
           Y  + F+E   N +      TQT  D     +PFG++ L+ G+    S    R +  AF 
Sbjct: 248 YHGMVFTETFGNLAYAFACRTQTLRDVGGNANPFGVFLLLQGLET-LSLRMERHVQNAFA 306

Query: 225 LPK 233
           L K
Sbjct: 307 LAK 309


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 503 GSRQSAERSRRVPRIFRCRCWLFE 432
           GS    E    +  +FRCRC +F+
Sbjct: 71  GSNDDEEDDLDITTLFRCRCMIFD 94


>SPAC22H12.01c |mug35|SPAC23G3.13c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = +2

Query: 200 QAAEQSVYFAQKSGNADRRYK--SLTDVVLDQTANGVSLVSRNFVFLDNDFTLLPAFRTT 373
           Q  E+S    Q+  +  ++Y    L ++V++QTA+   + SRN + +D     L   R  
Sbjct: 162 QDVEESRNLVQEPKHRSKKYDRLGLDELVMEQTASLWKICSRNGMSVDE---FLRFIRMG 218

Query: 374 LQKDFGASIKVL 409
           L+ +F  S +V+
Sbjct: 219 LESNFQHSNQVI 230


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 310 QGYSVRGLIEHHVRQGFVPSISVAG 236
           +G+     +++H+R+  VPS S+ G
Sbjct: 186 EGFEKWSQLQNHIREAHVPSCSICG 210


>SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 209

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +2

Query: 200 QAAEQSVYFAQKSGNADRRYKS--LTDVVLDQ 289
           +A  ++V    K+  AD+RYKS  L+D +L+Q
Sbjct: 55  KAKSRNVTLVDKNTKADKRYKSEKLSDYLLNQ 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,400,393
Number of Sequences: 5004
Number of extensions: 72922
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)