Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30752
(822 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0771 + 6453130-6454488 43 3e-04
01_01_1152 + 9170628-9171899 33 0.21
04_04_0878 + 29039110-29039366,29039634-29039822,29039907-290400... 33 0.36
11_01_0532 + 4201374-4201401,4201475-4202652,4204316-4204670,420... 31 1.5
04_04_0619 + 26652923-26653267,26653440-26654273 31 1.5
01_06_0359 + 28722524-28722613,28722794-28722863,28723062-287231... 30 1.9
11_01_0767 + 6438648-6438809,6439146-6440000 30 2.6
12_02_0065 - 13109652-13110746,13110843-13111762,13139462-131395... 29 5.9
08_02_1339 + 26252609-26252925,26253025-26253227,26253379-262535... 29 5.9
04_04_1107 - 30954647-30954769,30955052-30955141,30955309-309556... 29 5.9
08_01_1061 - 10804269-10804352,10804464-10804593,10804696-108047... 28 7.8
>11_01_0771 + 6453130-6454488
Length = 452
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +1
Query: 526 NVISFKGLWGLPFNKSDTELEPFYNED 606
N I FKG W PFN+SDTE +PFY D
Sbjct: 208 NAIYFKGKWDRPFNESDTERKPFYRHD 234
>01_01_1152 + 9170628-9171899
Length = 423
Score = 33.5 bits (73), Expect = 0.21
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 526 NVISFKGLWGLPFNKSDTELEPFYNEDRLVIGSVNMMYQKGQFPF 660
N + FKG W LPF+ S T PF+ D G+V + + PF
Sbjct: 194 NAVHFKGTWSLPFHPSATFHAPFHLLDG---GAVRAPFMTTEIPF 235
>04_04_0878 +
29039110-29039366,29039634-29039822,29039907-29040044,
29040786-29041011,29041686-29041878,29041963-29042123
Length = 387
Score = 32.7 bits (71), Expect = 0.36
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -3
Query: 655 GTAPSGTSCLRCLLPVGL-HYRRAPVRCQIC*TAIPKGL*RISRWLVSILFLEVVRAQNV 479
G A +G S R LLP G +RR+ RC ++PKG R R L + ++ ++V
Sbjct: 13 GGAGAGASSGRSLLPKGSGRFRRSSARC-----SLPKGSDRFRRSLSPVNSRSLLEGRDV 67
Query: 478 RDA 470
RDA
Sbjct: 68 RDA 70
>11_01_0532 +
4201374-4201401,4201475-4202652,4204316-4204670,
4204791-4204864,4206965-4207056,4207500-4207573,
4207680-4207822,4207889-4207909
Length = 654
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -2
Query: 176 SDSRHQSPYPKRRDHNVPISLSL 108
SDSR Q P+P RDHN +S S+
Sbjct: 584 SDSRGQGPHPNFRDHNGGVSSSI 606
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +2
Query: 326 VFLDNDFTLLPAFRTTLQKDFGASIKVLDFSDPNSARIA--NTYI-EKSGGRVSNVLRSD 496
+F+D L P F++T GA + +DF + +A A N +I + + GR++N +
Sbjct: 83 IFVDRSLRLRPEFQSTAAAAHGAFPRSVDFQNQANAAAAEVNRFISQATNGRLNNTISPG 142
Query: 497 DF 502
F
Sbjct: 143 TF 144
>01_06_0359 +
28722524-28722613,28722794-28722863,28723062-28723159,
28724029-28724167,28724243-28724370,28724500-28724592,
28724707-28724757,28725405-28725470,28725568-28725633,
28725900-28725977,28726248-28726427,28726502-28726577,
28726660-28726823,28727569-28727931
Length = 553
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/56 (25%), Positives = 32/56 (57%)
Frame = -3
Query: 568 C*TAIPKGL*RISRWLVSILFLEVVRAQNVRDASPGFFDVGVGYSSRIRVAEVEHF 401
C A+ + L + W+V++ L V+ + +RD P F + + ++ R+R+ ++ +F
Sbjct: 71 CIHALARRLAKTRNWIVALKTLVVIH-RLLRDGDPTFREEFLTFTQRVRILQLSNF 125
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +1
Query: 526 NVISFKGLWGLPFNKSDTELEPFYNED 606
N I FKG W PF+KSDT F D
Sbjct: 93 NAIYFKGEWLAPFDKSDTAEREFRRLD 119
>12_02_0065 -
13109652-13110746,13110843-13111762,13139462-13139528,
13139607-13139675,13139877-13140020,13140100-13140171,
13140316-13140387,13140466-13140558,13140655-13140726,
13140809-13140925
Length = 906
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 667 LKKLKAFVLELSLRHRRKVLDAGHTPATRERRSQTMYKNFRRCQSQG 807
L+K KA ++ L L AGH + E + + M K FR C + G
Sbjct: 852 LRKAKALGVQRLLIRTDSKLVAGHVDRSFEAKEEGMKKIFRGCPNHG 898
>08_02_1339 +
26252609-26252925,26253025-26253227,26253379-26253536,
26253802-26253870,26253980-26254461,26254558-26254766,
26254865-26254901,26254991-26255075,26255186-26255269,
26255344-26255412,26255520-26255663
Length = 618
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -2
Query: 554 PQRPLKDITLVSINLVLGSRQSAERSRRVPRIFRC 450
P+R +KD + + LVLG + +E+S+ +++ C
Sbjct: 354 PEREVKDAIIAHLKLVLGEIEKSEKSKH-EKLYNC 387
>04_04_1107 -
30954647-30954769,30955052-30955141,30955309-30955617,
30955732-30955842,30955945-30956379,30956452-30956610,
30957044-30957994,30959016-30959483
Length = 881
Score = 28.7 bits (61), Expect = 5.9
Identities = 21/79 (26%), Positives = 31/79 (39%)
Frame = -2
Query: 431 PNSGR*SRAL*SKHRNPSGASS*RPATR*NRCPRRQSSD*PGILRSRSDRAPRPSGICTF 252
PN G R + P + P + P + +SD P I R ++ P PS C
Sbjct: 346 PNEGLYLRRSKRLTKQPEQPINDDPVQQPAASPNQYNSDPPDIDRLIANLCPSPSPQCQM 405
Query: 251 DQRCRIFGQNKRSAQLPVA 195
Q C N ++ LP +
Sbjct: 406 PQACSSESGNADASVLPAS 424
>08_01_1061 -
10804269-10804352,10804464-10804593,10804696-10804745,
10805154-10805216,10806235-10806375,10806541-10806925,
10807735-10808339
Length = 485
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -1
Query: 402 LIEAPKSFWSVVLKAGNKVKSLSKKTKFRL-TRDTPFAV*SSTTSV 268
++E S SV + G+ +K + ++TKFRL + D P+ S SV
Sbjct: 319 VVEVGVSTSSVPITYGSAIKLMHERTKFRLHSHDVPYGSGSGQQSV 364
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,217,774
Number of Sequences: 37544
Number of extensions: 487509
Number of successful extensions: 1315
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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