Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30752
         (822 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      41   0.001
SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      31   0.85 
SB_2972| Best HMM Match : PA (HMM E-Value=1.8)                         30   2.0  
SB_21821| Best HMM Match : MRG (HMM E-Value=0)                         30   2.6  
SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_8850| Best HMM Match : LIM (HMM E-Value=0.51)                       29   4.6  
SB_42197| Best HMM Match : rve (HMM E-Value=0.017)                     28   8.0  
SB_33247| Best HMM Match : Ammonium_transp (HMM E-Value=0)             28   8.0  

>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 21/58 (36%), Positives = 29/58 (50%)
 Frame = +1

Query: 526 NVISFKGLWGLPFNKSDTELEPFYNEDRLVIGSVNMMYQKGQFPFSNLKKLKAFVLEL 699
           N I FKG+W  PF K  +    F       +  V MM+QK +F + +  K K  +LEL
Sbjct: 127 NAIYFKGMWDKPFKKEHSHSSEFRTTSSNEV-EVEMMFQKSKFKYLHSDKYKCKLLEL 183


>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +1

Query: 526 NVISFKGLWGLPFNKSDTELEPFYNEDRLVIGSVNMMYQKGQFPFSNLKKLKAFVLEL 699
           N + FKG W   FN++ T+   F       I  V  MYQ  +F +     L   ++EL
Sbjct: 164 NAVYFKGSWMKHFNRNATQSGKFKTTPSQEI-QVQFMYQSSEFRYLESSTLGCQIVEL 220


>SB_2972| Best HMM Match : PA (HMM E-Value=1.8)
          Length = 151

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +1

Query: 616 IGSVNMMYQKGQFPFSNLKKLKAFVLELSLRHRRKVLDAGHTPATRERRS 765
           I +V + +Q+GQ     +  ++     LS+R   K + AG  PA++E+RS
Sbjct: 42  IPAVLLFHQEGQILMRAITAVEDTSRTLSVRVAAKAIKAGEKPASQEKRS 91


>SB_21821| Best HMM Match : MRG (HMM E-Value=0)
          Length = 292

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = -3

Query: 409 EHFNRSTEILLERRPEGRQQGEIVVQEDKVPTDQGYSVRGLIEHHVRQGFVPSIS 245
           E+FN      L  + E  Q GEI+V+   +P  Q Y    L+   VR G   S S
Sbjct: 192 EYFNVMLGTQLLYKFERPQYGEILVENSNLPMSQVYGAEHLLRLFVRLGSALSYS 246


>SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1488

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -2

Query: 239  RIFGQNKRSAQLPVAITGRS*SDSRHQSPYPKRRDHNVPIS 117
            R FG NK   QL  + TG S   ++   P P RR+H +P++
Sbjct: 1432 RAFGVNK---QLYTSPTGESLGVNKQLHPSPHRREHFMPVN 1469


>SB_8850| Best HMM Match : LIM (HMM E-Value=0.51)
          Length = 1039

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 92 FNAKIPWSLAEIDITITRADEKKN 21
          FN ++PWS     IT+TR D K +
Sbjct: 15 FNERVPWSSYCFPITVTRKDRKND 38


>SB_42197| Best HMM Match : rve (HMM E-Value=0.017)
          Length = 602

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +3

Query: 513 IDTNQRDILQRPLGIAVQQI*HRTGALL**RPTGNRQRKHD 635
           IDTN+RDI QR L  A++ +   TG        G+ +++HD
Sbjct: 240 IDTNKRDIFQRQLDSALEGLNGVTGIADDIFVYGSTEKEHD 280


>SB_33247| Best HMM Match : Ammonium_transp (HMM E-Value=0)
          Length = 486

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 683 PSYWNFPYGTDGKYSMLVILPQPENEDRRP 772
           P YW       G +SML + P  E EDRRP
Sbjct: 274 PRYWEHR----GSHSMLRVFPTGEAEDRRP 299


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,787,891
Number of Sequences: 59808
Number of extensions: 557997
Number of successful extensions: 1583
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1581
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)