Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30752
         (822 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35580.1 68415.m04357 serpin family protein / serine protease...    35   0.075
At4g21180.1 68417.m03063 DNAJ heat shock N-terminal domain-conta...    33   0.23 
At2g40720.1 68415.m05023 pentatricopeptide (PPR) repeat-containi...    30   1.6  
At1g79940.1 68414.m09342 DNAJ heat shock N-terminal domain-conta...    30   1.6  
At1g47710.1 68414.m05302 serpin, putative / serine protease inhi...    30   1.6  
At2g43620.1 68415.m05422 chitinase, putative similar to basic en...    29   2.8  
At4g14400.3 68417.m02222 ankyrin repeat family protein contains ...    29   4.9  
At4g14400.2 68417.m02221 ankyrin repeat family protein contains ...    29   4.9  
At4g14400.1 68417.m02220 ankyrin repeat family protein contains ...    29   4.9  
At1g64030.1 68414.m07252 serpin family protein / serine protease...    29   4.9  
At1g60140.1 68414.m06775 glycosyl transferase family 20 protein ...    29   4.9  
At2g43610.1 68415.m05421 glycoside hydrolase family 19 protein s...    28   6.5  
At5g35753.1 68418.m04282 expressed protein                             28   8.6  

>At2g35580.1 68415.m04357 serpin family protein / serine protease
           inhibitor family protein similar to protein zx [Hordeum
           vulgare subsp. vulgare] GI:19071, serpin [Triticum
           aestivum] GI:1885350; contains Pfam profile PF00079:
           Serpin (serine protease inhibitor)
          Length = 374

 Score = 34.7 bits (76), Expect = 0.075
 Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
 Frame = +2

Query: 266 LTDVVLDQTANGVSLVSR-NFVFLDNDFTLLPAFRTTLQKDFGASIKVLDFSDPNSA--R 436
           +T V+ D TA+G   +S  N ++++    + P+F+  L   + A+   +DF        R
Sbjct: 77  VTTVLADSTASGGPTISAANGLWIEKTLNVEPSFKDLLLNSYKAAFNRVDFRTKADEVNR 136

Query: 437 IANTYIEK-SGGRVSNVLRSD 496
             N+++EK + G ++N+L S+
Sbjct: 137 EVNSWVEKQTNGLITNLLPSN 157


>At4g21180.1 68417.m03063 DNAJ heat shock N-terminal
           domain-containing protein / sec63 domain-containing
           protein similar to SP|Q9UGP8 Translocation protein SEC63
           homolog {Homo sapiens}; contains Pfam profiles PF00226
           DnaJ domain, PF02889 Sec63 domain
          Length = 661

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +3

Query: 87  IELLYHTQTQTDGHVVISPFGIWTLMTGIALGASGNSYRQLSRAFILPKNP 239
           I L+YHT+  +    +  PFGI  L  G +      +YR+LS  +   KNP
Sbjct: 82  IFLIYHTKNMSRESQLFEPFGILGLEPGASDSEIKKAYRRLSIQYHPDKNP 132


>At2g40720.1 68415.m05023 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 860

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -2

Query: 800 D*HLRKFLYMVCDLRSRVAGV*PASSTFRRCRKESSSTKALSFFRFENGNCPFWYIMFTL 621
           D H+R+ L  V D     A +   +S  R   ++    +AL  +   +G+ PFW  +FT 
Sbjct: 7   DVHIRRGLCCVADSYISPASI---NSGIRALIQKGEYLQALHLYSKHDGSSPFWTSVFTF 63

Query: 620 P 618
           P
Sbjct: 64  P 64


>At1g79940.1 68414.m09342 DNAJ heat shock N-terminal
           domain-containing protein / sec63 domain-containing
           protein similar to SP|Q9UGP8 Translocation protein SEC63
           homolog {Homo sapiens}; contains Pfam profiles PF00226
           DnaJ domain, PF02889 Sec63 domain
          Length = 702

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 87  IELLYHTQTQTDGHVVISPFGIWTLMTGIALGASGNSYRQLSRAFILPKNP 239
           I L+Y+T+  +    V  PF I  L  G+       +YR+LS  +   KNP
Sbjct: 82  IFLIYYTKNMSREAQVFDPFSILGLEPGVTDSEIKKAYRRLSIQYHPDKNP 132


>At1g47710.1 68414.m05302 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 391

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
 Frame = +2

Query: 275 VVLDQTANGVSLVS-RNFVFLDNDFTLLPAFRTTLQKDFGASIKVLDFSDPNSARIA--N 445
           V+ D +ANG   +S  N  ++D   +  P+F+  L+  + A+    DF       IA  N
Sbjct: 80  VLADGSANGGPKLSVANGAWIDKSLSFKPSFKQLLEDSYKAASNQADFQSKAVEVIAEVN 139

Query: 446 TYIEK-SGGRVSNVL 487
           ++ EK + G ++ VL
Sbjct: 140 SWAEKETNGLITEVL 154


>At2g43620.1 68415.m05422 chitinase, putative similar to basic
           endochitinase CHB4 precursor SP:Q06209 from [Brassica
           napus]
          Length = 283

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = +2

Query: 692 WNFPYGTDGKYSMLVILPQPENEDRRP-----CTRTFADVNLKDV 811
           WN+ YG  GK+  L +L  P+   R P     C   F ++N++ V
Sbjct: 190 WNYNYGAAGKFLGLPLLTDPDMVARSPQVAFQCAMWFWNLNVRPV 234


>At4g14400.3 68417.m02222 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 604

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = -2

Query: 563 NGNPQRPLKDITLVSINLVLGSRQSAERSRRVPRIFRCRCWLFEPNSGR 417
           NG P   +K  T  SI  +       E  + +  IF C C LFE NS R
Sbjct: 23  NGTPMERVKSNTGDSILHIAAKWGHLELVKEI--IFECPCLLFEQNSSR 69


>At4g14400.2 68417.m02221 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 604

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = -2

Query: 563 NGNPQRPLKDITLVSINLVLGSRQSAERSRRVPRIFRCRCWLFEPNSGR 417
           NG P   +K  T  SI  +       E  + +  IF C C LFE NS R
Sbjct: 23  NGTPMERVKSNTGDSILHIAAKWGHLELVKEI--IFECPCLLFEQNSSR 69


>At4g14400.1 68417.m02220 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 670

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = -2

Query: 563 NGNPQRPLKDITLVSINLVLGSRQSAERSRRVPRIFRCRCWLFEPNSGR 417
           NG P   +K  T  SI  +       E  + +  IF C C LFE NS R
Sbjct: 89  NGTPMERVKSNTGDSILHIAAKWGHLELVKEI--IFECPCLLFEQNSSR 135


>At1g64030.1 68414.m07252 serpin family protein / serine protease
           inhibitor family protein similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311, serpin [Triticum
           aestivum] GI:871551; contains Pfam profile PF00079:
           Serpin (serine protease inhibitor)
          Length = 385

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 526 NVISFKGLWGLPFNKSDTELEPFY 597
           N +SFKG W  PF K  T    FY
Sbjct: 170 NALSFKGAWKRPFEKYYTRDNDFY 193


>At1g60140.1 68414.m06775 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein contains Pfam
           profile: PF02358 trehalose-phosphatase
          Length = 861

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
 Frame = +2

Query: 281 LDQTANGVSLVSRNFVFLDNDFTLLPAFRTTLQKDFGA----SIKVLDFSDPNSARIANT 448
           ++QT +     S+  +FLD D TL+P   T++ KD  A    ++K L  SDPN+      
Sbjct: 579 IEQTVSAYRRSSKRAIFLDYDGTLVP--ETSIVKDPSAEVISALKAL-CSDPNN----TI 631

Query: 449 YIEKSGGRVS 478
           +I    G+VS
Sbjct: 632 FIVSGRGKVS 641


>At2g43610.1 68415.m05421 glycoside hydrolase family 19 protein
           similar to chitinase GI:17799 from [Brassica napus];
           contains Pfam profiles PF00182: Chitinase class I,
           PF00187: Chitin recognition protein
          Length = 281

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = +2

Query: 692 WNFPYGTDGKYSMLVILPQPENEDRRP-----CTRTFADVNLKDV 811
           WN+ YG  GK+  L +L  P+   R P     C   F + N++ V
Sbjct: 188 WNYNYGAAGKFLGLPLLKDPDMVARSPTVAFQCAMWFWNKNVRPV 232


>At5g35753.1 68418.m04282 expressed protein
          Length = 592

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/74 (25%), Positives = 29/74 (39%)
 Frame = -1

Query: 375 SVVLKAGNKVKSLSKKTKFRLTRDTPFAV*SSTTSVRDLYLRSALPDFWAK*TLCSAACS 196
           S  L+A +    L   ++   T +   A  S  +   D YL+  L  FW   T C     
Sbjct: 48  SYALRAKSLFPDLEGLSQMLTTYEVYIASQSRRSGEIDYYLQKRLDTFWTVCTYCKVQYE 107

Query: 195 YYRTLLKRFPSSKS 154
           Y R  + +  S K+
Sbjct: 108 YLRKYVNKRLSCKN 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,915,597
Number of Sequences: 28952
Number of extensions: 389043
Number of successful extensions: 1097
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)