Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30749
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.08c |mrs2||magnesium ion transporter Mrs2|Schizosacchar...    29   0.58 
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    26   7.1  

>SPBC25H2.08c |mrs2||magnesium ion transporter
           Mrs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 344 MISLFGTFLRDPIPEFARICRSLKLFP 264
           M+ + G  LR  I  F+ ICRSL LFP
Sbjct: 1   MVLIVGFNLRTSIASFSPICRSLFLFP 27


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 428 INYILAKVQHSQNRHLQICHDTKY*STMMISLFGTF 321
           +  I  + +H +NR L I HD K+  +++ S + TF
Sbjct: 10  VQQIHVQARHPKNRLLSIAHDAKFVDSVIAS-YPTF 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,418
Number of Sequences: 5004
Number of extensions: 53425
Number of successful extensions: 109
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)