Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30749
         (796 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0196 + 1559190-1560395                                           29   5.6  
01_06_0063 + 26100877-26101144,26101683-26101990,26102133-261028...    28   9.8  

>03_01_0196 + 1559190-1560395
          Length = 401

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 50  IVGMLKLHALRPYSPRPTL-AYSNACNTCFRT 142
           +V +LK HAL  Y+P+PTL   S A  T   T
Sbjct: 248 LVTLLKYHALPSYNPKPTLKTVSRAMRTLAST 279


>01_06_0063 +
           26100877-26101144,26101683-26101990,26102133-26102849,
           26103338-26103466,26103594-26103698,26103732-26103797,
           26104102-26104302,26104437-26104562
          Length = 639

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 92  PRPTLAYSNACNTCFRTPEISFTFHYSNYTRSIHSELER 208
           P   LAY NA   C++TP     +    Y+RS  SE +R
Sbjct: 190 PESILAYKNAYPGCYKTPRSPTPYSGKFYSRS-DSETKR 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,123,640
Number of Sequences: 37544
Number of extensions: 274660
Number of successful extensions: 461
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)