Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30749
         (796 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81454-8|CAD60404.1|  330|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U50300-5|AAC48103.2|  337|Caenorhabditis elegans Serpentine rece...    30   2.2  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    29   3.8  

>Z81454-8|CAD60404.1|  330|Caenorhabditis elegans Hypothetical
           protein B0391.12 protein.
          Length = 330

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +2

Query: 134 FRTPEISFTFHYSNYTRSIHSELERLLINMACLYSHYCRHYIIRGIVLMSDI 289
           FR P+ +  FHY N+   I      +LIN++ L   YC + I + I  +S I
Sbjct: 182 FRFPDENGGFHY-NWNSFIALSFMLILINLSFLTVFYCGYRIYKTINTLSSI 232


>U50300-5|AAC48103.2|  337|Caenorhabditis elegans Serpentine
           receptor, class t protein18 protein.
          Length = 337

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 528 YILIIAERLSVNLSTKRITKYYCVSFPEAFIYCYF 632
           Y++ I  + S   STK++TK       +AF++C+F
Sbjct: 234 YLVWIYLKKSTQSSTKKLTKMQATVLLQAFLFCFF 268


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical protein
             K07E12.1b protein.
          Length = 12268

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +2

Query: 110   YSNACNTCFRTPEISFTFHYSNYTRSIHSEL 202
             YS++ +  F+ P  S TFH+S++T S++ ++
Sbjct: 12237 YSSSYSYIFQNPPKSVTFHHSSFTFSLNPKI 12267


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,294,089
Number of Sequences: 27780
Number of extensions: 285370
Number of successful extensions: 619
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)