Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30749
         (796 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09310.1 68417.m01539 SPla/RYanodine receptor (SPRY) domain-c...    28   6.2  
At4g09250.1 68417.m01532 SPla/RYanodine receptor (SPRY) domain-c...    28   6.2  
At4g09200.1 68417.m01522 SPla/RYanodine receptor (SPRY) domain-c...    28   6.2  
At1g66920.1 68414.m07605 serine/threonine protein kinase, putati...    28   6.2  

>At4g09310.1 68417.m01539 SPla/RYanodine receptor (SPRY)
           domain-containing protein low similarity to RanBPM [Homo
           sapiens] GI:15080674; contains Pfam profile PF00622:
           SPRY domain
          Length = 397

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = +2

Query: 50  IVGMLKLHALRPYSPRPTLAYSNACNTCFRTPEISFTFHYSNYTRSIHSELERLL--INM 223
           IVG +     RP  P   L   N   T     +I+F+F + ++  S+  + ER +  I+M
Sbjct: 145 IVGTIPRQFRRPVYPTIVLHSQNEAVTVNFGGQIAFSFDFEHFEESLRVKKEREIEKISM 204

Query: 224 ACLYSH-YCRHYIIR 265
           +   SH   + Y++R
Sbjct: 205 SRSISHGLVKTYLLR 219


>At4g09250.1 68417.m01532 SPla/RYanodine receptor (SPRY)
           domain-containing protein low similarity to RanBPM [Homo
           sapiens] GI:15080674; contains Pfam profile PF00622:
           SPRY domain
          Length = 427

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = +2

Query: 50  IVGMLKLHALRPYSPRPTLAYSNACNTCFRTPEISFTFHYSNYTRSIHSELERLL--INM 223
           IVG +     RP  P   L   N   T     +I+F+F + ++  S+  + ER +  I+M
Sbjct: 223 IVGTIPRQFRRPVYPTIVLHSQNEAVTVNFGGQIAFSFDFEHFEESLRVKKEREIEKISM 282

Query: 224 ACLYSH-YCRHYIIR 265
           +   SH   + Y++R
Sbjct: 283 SRSISHGLVKTYLLR 297


>At4g09200.1 68417.m01522 SPla/RYanodine receptor (SPRY)
           domain-containing protein low similarity to RanBPM [Homo
           sapiens] GI:15080674; contains Pfam profile PF00622:
           SPRY domain
          Length = 397

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = +2

Query: 50  IVGMLKLHALRPYSPRPTLAYSNACNTCFRTPEISFTFHYSNYTRSIHSELERLL--INM 223
           IVG +     RP  P   L   N   T     +I+F+F + ++  S+  + ER +  I+M
Sbjct: 145 IVGTIPRQFRRPVYPTIVLHSQNEAVTVNFGGQIAFSFDFEHFEESLRVKKEREIEKISM 204

Query: 224 ACLYSH-YCRHYIIR 265
           +   SH   + Y++R
Sbjct: 205 SRSISHGLVKTYLLR 219


>At1g66920.1 68414.m07605 serine/threonine protein kinase, putative
           similar to receptor serine/threonine kinase PR55K
           gi|1235680|gb|AAC49208; contains protein kinase domain,
           Pfam:PF00069; contains serine/threonine protein kinase
           domain, INTERPRO:IPR002290
          Length = 609

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = -2

Query: 150 ISGVLKHVL---HAFEYANVGRGEYGRSACSFSIPTITYVIRPNLLTLWPTY 4
           IS  L HVL   H +    V R ++ +S C    P     + P +  + PTY
Sbjct: 75  ISDHLYHVLSINHTYNTLRVARTDFLQSICLSPFPFANATLPPEIFDILPTY 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,961,970
Number of Sequences: 28952
Number of extensions: 248873
Number of successful extensions: 462
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)