Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30748
         (795 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0195 + 1327071-1327187,1328060-1328203,1328340-1328431,132...    38   0.009
03_01_0560 + 4162206-4162607                                           30   1.8  
05_04_0231 + 19254766-19255153,19255245-19255480,19256609-192566...    29   4.3  
05_05_0017 + 21546434-21546841                                         28   9.8  

>02_01_0195 +
           1327071-1327187,1328060-1328203,1328340-1328431,
           1329393-1329579,1329676-1329831,1329959-1330012
          Length = 249

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 24/81 (29%), Positives = 40/81 (49%)
 Frame = +3

Query: 264 SASAGVYVDMFTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMSMG 443
           +++ G Y+ +      G L+ +   G +  L + P   +    R G LL   L  G S+G
Sbjct: 50  ASAVGAYLHVALNI-GGMLTMLGCVGSIAWLFSVPVFEERK--RFGILLAAALLEGASVG 106

Query: 444 PLLEYVSVVDPSIIITALLGT 506
           PL++     D SI++TA +GT
Sbjct: 107 PLIKLAVDFDSSILVTAFVGT 127



 Score = 31.5 bits (68), Expect = 0.80
 Identities = 18/84 (21%), Positives = 39/84 (46%)
 Frame = +2

Query: 509 LVFVCFSAAAMLAERGSWAIPRWHIDDTVHVYVTNDFG*SVYAVTFPVPXXXXXXXXXXC 688
           + F CF+ AA++A+R  +      +   + + +   F  S++  +               
Sbjct: 129 IAFGCFTCAAIVAKRREYLYLGGLLSSGLSILLWLQFAASIFGHSTGSFMFEVYFGLLIF 188

Query: 689 GGFVLFDTQLIIEKRRMGSKDFVQ 760
            G++++DTQ IIE+   G  D+++
Sbjct: 189 LGYMVYDTQEIIERAHHGDMDYIK 212


>03_01_0560 + 4162206-4162607
          Length = 133

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 294 FTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMSMG 443
           F  F  G   A+  A L L+L+A  D     +   G+L G  LT   S+G
Sbjct: 58  FLSFTIGTALALAAAYLALLLLAATDKMLGADAVTGFLWGADLTGAASLG 107


>05_04_0231 +
           19254766-19255153,19255245-19255480,19256609-19256632,
           19257612-19258009,19258109-19258241,19258399-19258488,
           19258613-19258843
          Length = 499

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 753 KSLLPILRFSMISCVSNSTKPPHEH 679
           +SL+PI++  ++SC S   +P H H
Sbjct: 447 QSLIPIVKSPLMSCTSTPLRPAHGH 471


>05_05_0017 + 21546434-21546841
          Length = 135

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 497 ARHYLVFVCFSAAAMLAERGSWAIPRWHID 586
           +R +L+F+C  AAA  A  G+ A+P   +D
Sbjct: 7   SRAHLLFLCSLAAAAAAAAGALAVPAAEVD 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,069,270
Number of Sequences: 37544
Number of extensions: 405465
Number of successful extensions: 796
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)