Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30748
         (795 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032647-7|CAA21691.2|  360|Caenorhabditis elegans Hypothetical ...    29   5.1  
AC087794-7|AAG53706.1|  142|Caenorhabditis elegans Hypothetical ...    28   6.7  
AF099923-3|AAN63403.1|  784|Caenorhabditis elegans Ferm domain (...    28   8.9  
AF099923-2|AAM48544.1|  814|Caenorhabditis elegans Ferm domain (...    28   8.9  
AF099923-1|AAM48545.1|  853|Caenorhabditis elegans Ferm domain (...    28   8.9  
AF040655-12|AAB95039.1|  507|Caenorhabditis elegans Hypothetical...    28   8.9  

>AL032647-7|CAA21691.2|  360|Caenorhabditis elegans Hypothetical
           protein Y57A10B.4 protein.
          Length = 360

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 476 IYHNNCSARHYLVFVCFSAAAMLAERGSWAIPRWHIDDTVHV 601
           +Y  +C   HY+  V F+   ++ ERG   I  W+I D  +V
Sbjct: 126 LYVASCFMWHYIYSVIFAPVVVIVERG---IATWYIQDYENV 164


>AC087794-7|AAG53706.1|  142|Caenorhabditis elegans Hypothetical
           protein Y32G9A.3 protein.
          Length = 142

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -1

Query: 747 LLPILRFSMISCVSNSTKPPHEHE---AQDKDELGT 649
           LL I+ FS  + V + T PPHE     AQD  EL T
Sbjct: 74  LLTIIYFSQATNVLDPTSPPHEDVASLAQDLKELAT 109


>AF099923-3|AAN63403.1|  784|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 8,
           isoform c protein.
          Length = 784

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 366 PDNGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPS 479
           PD  +  ++R G  +GFG  +   +  ++++VS   PS
Sbjct: 90  PDGKRTVSIRRGKDIGFGFVAAGQLPTIIQFVSPEGPS 127


>AF099923-2|AAM48544.1|  814|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 8,
           isoform a protein.
          Length = 814

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 366 PDNGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPS 479
           PD  +  ++R G  +GFG  +   +  ++++VS   PS
Sbjct: 90  PDGKRTVSIRRGKDIGFGFVAAGQLPTIIQFVSPEGPS 127


>AF099923-1|AAM48545.1|  853|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 8,
           isoform b protein.
          Length = 853

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 366 PDNGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPS 479
           PD  +  ++R G  +GFG  +   +  ++++VS   PS
Sbjct: 129 PDGKRTVSIRRGKDIGFGFVAAGQLPTIIQFVSPEGPS 166


>AF040655-12|AAB95039.1|  507|Caenorhabditis elegans Hypothetical
           protein T24E12.1 protein.
          Length = 507

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +3

Query: 636 QSHFLYQAHLYLGPHAHVAVLYYSTHNLSLRNAEW 740
           + HF+ +   YL  +    + +   HN+ + N EW
Sbjct: 442 EEHFIEEVSPYLKNYEEALMYWEENHNIEIMNPEW 476


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,623,034
Number of Sequences: 27780
Number of extensions: 361108
Number of successful extensions: 857
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)