Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30747
         (397 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2FJ52 Cluster: Putative uncharacterized protein; n=1; ...    35   0.50 
UniRef50_Q5CUH4 Cluster: Putative uncharacterized protein; n=2; ...    32   4.6  
UniRef50_Q22RU6 Cluster: Putative uncharacterized protein; n=1; ...    32   4.6  
UniRef50_Q7RGY2 Cluster: Repeat organellar protein-related; n=3;...    31   6.1  
UniRef50_Q4X3L5 Cluster: Putative uncharacterized protein; n=4; ...    31   8.1  

>UniRef50_A2FJ52 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 280

 Score = 35.1 bits (77), Expect = 0.50
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +1

Query: 295 STSDLPKSTFEIPKSSFETETYIRRGDEERRTK 393
           S SD PKST  +  S  E++ ++   DEERRTK
Sbjct: 138 SGSDFPKSTSNLSLSDLESQIHLNPKDEERRTK 170


>UniRef50_Q5CUH4 Cluster: Putative uncharacterized protein; n=2;
           Cryptosporidium|Rep: Putative uncharacterized protein -
           Cryptosporidium parvum Iowa II
          Length = 823

 Score = 31.9 bits (69), Expect = 4.6
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
 Frame = +3

Query: 96  KKYRPACQTQCTYYKFRTIFRRKQTVTRV**EKMNSPVSAFAVYRSNKQSNYEKRKINLK 275
           KKYR A ++Q  ++  + +   KQT T+   EK +SP+     YRS K+ N +    N+ 
Sbjct: 410 KKYREAIRSQ--FFSSKNLLYNKQT-TKC--EKYHSPLINILNYRSRKRKNIKTLLSNIM 464

Query: 276 E*RTP-QKHFRSPQKHFRNPQKFIRNRNL 359
           E          S     R  QKF+ ++ L
Sbjct: 465 ERNEKFNSSLGSNSSRKRVQQKFVVSKAL 493


>UniRef50_Q22RU6 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1939

 Score = 31.9 bits (69), Expect = 4.6
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
 Frame = +1

Query: 58  ILYLIETLKKLTTKNIDQ---HVKHNVLIISSEQFSDVNKQ*-HVYNKKK*IHQYLHSLC 225
           ++ LIET K    K+ D+    +K+N +  S++ +S  NKQ  H+  +     Q L S  
Sbjct: 435 VIDLIETKKDSKKKSKDKSDFQIKNNQIQQSNQNYS--NKQDTHIDPEHAKNSQKLQSET 492

Query: 226 IDQTSNLI-MRKEK*I*KNNELLKSTSDLPKSTFEIPKS 339
             Q + LI + K K +  N + +K    LPK T ++PK+
Sbjct: 493 AYQINKLIELEKLKHLLLNEDQIKLFDYLPKPTLKLPKA 531


>UniRef50_Q7RGY2 Cluster: Repeat organellar protein-related; n=3;
           Plasmodium (Vinckeia)|Rep: Repeat organellar
           protein-related - Plasmodium yoelii yoelii
          Length = 1441

 Score = 31.5 bits (68), Expect = 6.1
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = +3

Query: 132 YYKFRTIFRRKQTVTRV**EKMNSPVSAFAVYRSNKQSNYEKRKINLKE*RTPQKHFRSP 311
           Y K  T F  K+ +  +   K+      F + +   +   E     LK+    ++HF++ 
Sbjct: 198 YEKLETNFEEKRKMIEMLDSKLIEKEKKFEIKKEKLEKENEVIMEKLKDIENKEEHFKNK 257

Query: 312 QKHFRN-PQKFIRNRNLYQK 368
           ++ F+N  +KFI   N   K
Sbjct: 258 EEKFKNKEEKFINLENELNK 277


>UniRef50_Q4X3L5 Cluster: Putative uncharacterized protein; n=4;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 478

 Score = 31.1 bits (67), Expect = 8.1
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = +1

Query: 61  LYLIETLKKLTTKNIDQHVKHNVLIISSEQFSDVNKQ*HVYNKKK*IHQYLHSLCIDQTS 240
           LYLI TLKK   K  D  +K+  ++   + +   N   + YNK+K ++  L  L     S
Sbjct: 159 LYLISTLKKYLDKYKDYIIKYEDIMDIKDYYKISN---YYYNKEKVVNTNLFFLIYKSLS 215

Query: 241 NLI 249
           N +
Sbjct: 216 NTV 218


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 324,750,981
Number of Sequences: 1657284
Number of extensions: 5381002
Number of successful extensions: 13063
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13041
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16503508437
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)