Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30747
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces ...    26   2.4  
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    25   5.6  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    25   5.6  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    24   7.4  
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch...    24   7.4  

>SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 288 PQKHFRSPQKHFRNPQKFIRNRN 356
           PQ HF   QK F N  K+   RN
Sbjct: 12  PQNHFSDDQKEFLNHAKYRVKRN 34


>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 70  IETLKKLTTKNIDQHVKHNVLIISSEQ 150
           IET K+L   NI  HVKH  + ISS +
Sbjct: 48  IETEKELPV-NIKLHVKHKGMSISSSR 73


>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 195  MNSPVSAFAVYRSNKQSNYEKRK 263
            + +PVS+FA   +NK +N +++K
Sbjct: 1108 IRTPVSSFAKQTTNKHANLKQKK 1130


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 67  LIETLKKLTTKNIDQHVKHNVLIISS 144
           ++ETLKK TT +    VK  + +++S
Sbjct: 177 VVETLKKATTSDKPAGVKKKIAVMTS 202


>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 411

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 70  IETLKKLTTKNIDQHVKHNVLI 135
           +ETL+K    N+D H+  N L+
Sbjct: 111 VETLQKDRVSNVDDHLSSNPLM 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,438,724
Number of Sequences: 5004
Number of extensions: 26022
Number of successful extensions: 63
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)