Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30747
         (397 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0408 - 5393354-5393659,5393974-5394219,5394442-5394583,539...    27   7.2  
03_01_0071 + 580988-581134,581276-581359,581499-581573,581892-58...    27   7.2  

>04_01_0408 -
           5393354-5393659,5393974-5394219,5394442-5394583,
           5394981-5395076,5395153-5395265,5395345-5395559,
           5395645-5395742,5395815-5395935,5396020-5396240,
           5396625-5396805,5396906-5397188,5397346-5397395,
           5398565-5398805
          Length = 770

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 82  KKLTTKNIDQHVKHNVLIISSEQFS 156
           +K+ TKN+  HV  ++L +++E FS
Sbjct: 501 QKIKTKNMPCHVNEDLLALAAEDFS 525


>03_01_0071 +
           580988-581134,581276-581359,581499-581573,581892-581973,
           582078-582223,582337-582408,582765-582837,582933-582998,
           583089-583123,583316-583387,583494-583622,583706-583813,
           584062-584118,584323-584439,584530-584612,585345-585411,
           585705-585776,585874-585924,586704-586763,586867-587016,
           587107-587322
          Length = 653

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +3

Query: 201 SPVSAFAVYRSNKQSNYEKRKINLKE*RTPQKHFRSPQKHFRNPQKFIRNRNLYQK 368
           S ++   V+ ++ ++ YEK   ++      +K    P +HF NP     N   +QK
Sbjct: 226 SALNIKGVFNTSNETKYEKDATDVN---CSRKRIELPNEHFSNPALTAANLTRWQK 278


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,219,649
Number of Sequences: 37544
Number of extensions: 128444
Number of successful extensions: 242
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)