Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30747
(397 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 32 0.19
SB_39605| Best HMM Match : zf-TRAF (HMM E-Value=5.3e-39) 29 1.8
SB_34575| Best HMM Match : zf-TRAF (HMM E-Value=2.5e-15) 29 1.8
SB_32850| Best HMM Match : GRP (HMM E-Value=0.089) 27 4.2
SB_15118| Best HMM Match : IncA (HMM E-Value=0.44) 27 5.5
SB_6936| Best HMM Match : TP2 (HMM E-Value=1.1) 27 7.3
SB_58549| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.6
SB_21566| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.6
SB_58338| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.6
SB_7343| Best HMM Match : EGF (HMM E-Value=0) 26 9.6
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 31.9 bits (69), Expect = 0.19
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Frame = +3
Query: 123 QCTYYKFRTIFRRKQTVTRV**EKMNSPVSAFAVYRSNKQSNYEKRKI---NLKE*RTPQ 293
+C +Y R R++ + + SP + RS ++ + RK+ K RTP+
Sbjct: 160 KCEFYGKRIRLRQELPRSGTSKSRSRSPSGRKSRSRSPRKRSRSPRKMLRSPRKRSRTPR 219
Query: 294 KHFRSPQKHFRNPQK 338
K RSP+K R+P+K
Sbjct: 220 KRSRSPRKRSRSPRK 234
>SB_39605| Best HMM Match : zf-TRAF (HMM E-Value=5.3e-39)
Length = 684
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = +3
Query: 150 IFRRKQTVTRV**EKMNSPVSAFAVYRSNKQSNYEKRKINLKE*RTPQKHFRSPQKHFRN 329
++ R+Q T K NSP F V + +Q + R N +E + P + P +
Sbjct: 271 VYNRRQPATPSRANKSNSPTVRFEVQQHTRQQHSRTRSSNERENQMPPSNSAPPLRSVSF 330
Query: 330 P 332
P
Sbjct: 331 P 331
>SB_34575| Best HMM Match : zf-TRAF (HMM E-Value=2.5e-15)
Length = 262
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = +3
Query: 150 IFRRKQTVTRV**EKMNSPVSAFAVYRSNKQSNYEKRKINLKE*RTPQKHFRSPQKHFRN 329
++ R+Q T K NSP F V + +Q + R N +E + P + P +
Sbjct: 186 VYNRRQPATPSRANKSNSPTVRFEVQQHTRQQHSRTRSSNERENQMPPSNSAPPLRSVSF 245
Query: 330 P 332
P
Sbjct: 246 P 246
>SB_32850| Best HMM Match : GRP (HMM E-Value=0.089)
Length = 676
Score = 27.5 bits (58), Expect = 4.2
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 226 IDQTSNLIMRKEK*I*KNNELLKSTSDLPKSTFEIPKSSFETETYIRRGDEER 384
+D+ +L R E+ N+ELLK ++ K EI E E R D+E+
Sbjct: 95 VDENQSLESRLEQETTHNSELLKRITETEKHLVEIGLRKKEAEESKRGDDDEQ 147
>SB_15118| Best HMM Match : IncA (HMM E-Value=0.44)
Length = 835
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 280 NELLKSTSDLPKSTFEIPKSSFETETYIRRGDEERR 387
N + K+ + P+S F KS +E IRRG ERR
Sbjct: 283 NFVFKAAGEAPRSWFV--KSKQSSEQVIRRGHRERR 316
>SB_6936| Best HMM Match : TP2 (HMM E-Value=1.1)
Length = 256
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +3
Query: 225 YRSNKQSNYEKRKINLKE*RTPQKHFRSPQKHFRNPQKFIRNRNLYQKR 371
Y + E++K+ R+P+ RS ++ R+ +K+ R+RN + R
Sbjct: 186 YAPKRDKPRERKKVARDRSRSPRSRSRSRERTKRHYEKYGRDRNRERTR 234
>SB_58549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 447
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 280 NELLKSTSDLPKSTFEIPKSSFETETYIRRGDEERR 387
N + K+ + P+S F K+ +E IRRG E R
Sbjct: 287 NFVFKAAGEAPRSWFVECKAEQSSEQVIRRGHHEHR 322
>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2014
Score = 26.2 bits (55), Expect = 9.6
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 204 PVSAFAVYRSNK-QSNYEKRKINLKE*RTPQKHFRSPQKH 320
P S + +RS+K QSN+ + K L++ KH P+ H
Sbjct: 978 PESIASNHRSSKEQSNHGQSKRKLRDFMPDDKHLGKPEAH 1017
>SB_21566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 26.2 bits (55), Expect = 9.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 282 RTPQKHFRSPQKHFRNPQKFIRNRNLY 362
R P+ R+PQ +NP F RNLY
Sbjct: 16 RNPEIGIRNPQSRIQNPNSF-EIRNLY 41
>SB_58338| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 282 RTPQKHFRSPQKHFRNPQKFIRN 350
R P FR+PQ +RNP RN
Sbjct: 67 RNPTAVFRNPQVVYRNPTAVFRN 89
>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
Length = 1233
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Frame = -3
Query: 182 YTCYCL--FTSENCSELIIST 126
Y C C+ FT ENCSE+ S+
Sbjct: 406 YNCTCIEGFTGENCSEITPSS 426
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,312,480
Number of Sequences: 59808
Number of extensions: 175164
Number of successful extensions: 473
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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