Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30747
(397 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81127-8|CAB03393.2| 495|Caenorhabditis elegans Hypothetical pr... 31 0.30
Z77652-14|CAB01123.2| 495|Caenorhabditis elegans Hypothetical p... 31 0.30
AF100304-4|AAC68910.1| 568|Caenorhabditis elegans Gex interacti... 28 2.1
AF100304-3|AAP82634.1| 542|Caenorhabditis elegans Gex interacti... 28 2.1
AF100304-2|AAU20837.1| 564|Caenorhabditis elegans Gex interacti... 28 2.1
AF100304-1|AAC68913.1| 545|Caenorhabditis elegans Gex interacti... 28 2.1
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p... 27 4.9
Z78198-5|CAB01571.1| 437|Caenorhabditis elegans Hypothetical pr... 27 4.9
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein. 27 4.9
Z98877-2|CAB11570.1| 907|Caenorhabditis elegans Hypothetical pr... 26 8.5
AF067216-9|AAC17520.2| 646|Caenorhabditis elegans Hypothetical ... 26 8.5
>Z81127-8|CAB03393.2| 495|Caenorhabditis elegans Hypothetical
protein C06B3.3 protein.
Length = 495
Score = 31.1 bits (67), Expect = 0.30
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +3
Query: 285 TPQKHFRSPQKHFRNPQKFIRNRNLYQK 368
T +K F +P+K NP++FIRN NL Q+
Sbjct: 405 TNEKIFENPEKF--NPERFIRNENLMQQ 430
>Z77652-14|CAB01123.2| 495|Caenorhabditis elegans Hypothetical
protein C06B3.3 protein.
Length = 495
Score = 31.1 bits (67), Expect = 0.30
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +3
Query: 285 TPQKHFRSPQKHFRNPQKFIRNRNLYQK 368
T +K F +P+K NP++FIRN NL Q+
Sbjct: 405 TNEKIFENPEKF--NPERFIRNENLMQQ 430
>AF100304-4|AAC68910.1| 568|Caenorhabditis elegans Gex interacting
protein protein4, isoform b protein.
Length = 568
Score = 28.3 bits (60), Expect = 2.1
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 228 RSNKQSNYEKRKINLKE*RTPQKHFRSPQKHFRNPQKFIRNRNLYQK 368
R ++ SN EKR++NLK QK R +K + +R N Q+
Sbjct: 159 RYHRLSNEEKRELNLKR-TLAQKRKRQREKEMEELESILRETNDIQE 204
>AF100304-3|AAP82634.1| 542|Caenorhabditis elegans Gex interacting
protein protein4, isoform c protein.
Length = 542
Score = 28.3 bits (60), Expect = 2.1
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 228 RSNKQSNYEKRKINLKE*RTPQKHFRSPQKHFRNPQKFIRNRNLYQK 368
R ++ SN EKR++NLK QK R +K + +R N Q+
Sbjct: 159 RYHRLSNEEKRELNLKR-TLAQKRKRQREKEMEELESILRETNDIQE 204
>AF100304-2|AAU20837.1| 564|Caenorhabditis elegans Gex interacting
protein protein4, isoform f protein.
Length = 564
Score = 28.3 bits (60), Expect = 2.1
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 228 RSNKQSNYEKRKINLKE*RTPQKHFRSPQKHFRNPQKFIRNRNLYQK 368
R ++ SN EKR++NLK QK R +K + +R N Q+
Sbjct: 155 RYHRLSNEEKRELNLKR-TLAQKRKRQREKEMEELESILRETNDIQE 200
>AF100304-1|AAC68913.1| 545|Caenorhabditis elegans Gex interacting
protein protein4, isoform a protein.
Length = 545
Score = 28.3 bits (60), Expect = 2.1
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 228 RSNKQSNYEKRKINLKE*RTPQKHFRSPQKHFRNPQKFIRNRNLYQK 368
R ++ SN EKR++NLK QK R +K + +R N Q+
Sbjct: 136 RYHRLSNEEKRELNLKR-TLAQKRKRQREKEMEELESILRETNDIQE 181
>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
C35C5.1 protein.
Length = 2962
Score = 27.1 bits (57), Expect = 4.9
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 67 LIETLKKLTTKNIDQHVKHNVLIISSEQFSDVNKQ*HVYNKKK*IHQYL 213
L +T+ L +N QHVK +L ++ + V+ + K +++YL
Sbjct: 2385 LFKTVSNLVQRNSLQHVKGVILAEDNQTLRSTDNTSEVFPESKAVNEYL 2433
>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 27.1 bits (57), Expect = 4.9
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 67 LIETLKKLTTKNIDQHVKHNVLIISSEQFSDVNKQ*HVYNKKK*IHQYL 213
L +T+ L +N QHVK +L ++ + V+ + K +++YL
Sbjct: 2385 LFKTVSNLVQRNSLQHVKGVILAEDNQTLRSTDNTSEVFPESKAVNEYL 2433
>Z78198-5|CAB01571.1| 437|Caenorhabditis elegans Hypothetical
protein F55C5.6 protein.
Length = 437
Score = 27.1 bits (57), Expect = 4.9
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -3
Query: 209 YW*IHFFLLYTCYCLFTSENCSELII 132
+W I FFLL C LF EN S II
Sbjct: 2 HWLIIFFLLGKCDGLFMQENASIAII 27
>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
Length = 2962
Score = 27.1 bits (57), Expect = 4.9
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 67 LIETLKKLTTKNIDQHVKHNVLIISSEQFSDVNKQ*HVYNKKK*IHQYL 213
L +T+ L +N QHVK +L ++ + V+ + K +++YL
Sbjct: 2385 LFKTVSNLVQRNSLQHVKGVILAEDNQTLRSTDNTSEVFPESKAVNEYL 2433
>Z98877-2|CAB11570.1| 907|Caenorhabditis elegans Hypothetical
protein Y69H2.2 protein.
Length = 907
Score = 26.2 bits (55), Expect = 8.5
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Frame = -3
Query: 182 YTCYCL--FTSENCSELIISTLCLTCW 108
Y C CL T NCSE+I LC+ W
Sbjct: 483 YDCTCLTGLTGANCSEII--DLCVPYW 507
>AF067216-9|AAC17520.2| 646|Caenorhabditis elegans Hypothetical
protein C35E7.4 protein.
Length = 646
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 54 GHIVFN*NFKETHYKKYRPAC 116
GH VFN F + H + Y P C
Sbjct: 256 GHYVFNQKFGQLHKQHYCPKC 276
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,909,255
Number of Sequences: 27780
Number of extensions: 143393
Number of successful extensions: 328
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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