Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30747
         (397 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   0.73 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   2.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   3.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   3.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   6.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   9.0  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.8 bits (49), Expect = 0.73
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 210 SAFAVYRSNKQSNYEKRKINLKE*RTPQK 296
           S F +Y++NK S  ++ K + K+ R   K
Sbjct: 591 SRFTIYKANKASKKKREKSSAKKERKATK 619


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 297 HFRSPQKHFRNP 332
           HFRSPQ H   P
Sbjct: 328 HFRSPQTHVMAP 339


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 297 HFRSPQKHFRNP 332
           HFRSPQ H   P
Sbjct: 332 HFRSPQTHKMAP 343


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 297 HFRSPQKHFRNP 332
           HFRSPQ H   P
Sbjct: 332 HFRSPQTHKMAP 343


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 297 HFRSPQKHFRNP 332
           HFRSP  H  +P
Sbjct: 337 HFRSPSTHNMSP 348


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +3

Query: 93  YKKYRPACQTQCTYYKFRTIFRRK 164
           +KKY P C        F    RRK
Sbjct: 211 HKKYYPCCDEPYPDIFFNITLRRK 234


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,347
Number of Sequences: 438
Number of extensions: 1897
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)