Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30747
         (397 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01460.1 68415.m00069 phosphoribulokinase/uridine kinase fami...    27   4.5  
At1g24200.1 68414.m03052 paired amphipathic helix repeat-contain...    27   4.5  
At1g76090.1 68414.m08836 S-adenosyl-methionine-sterol-C-methyltr...    27   6.0  
At1g49190.1 68414.m05515 two-component responsive regulator fami...    26   7.9  
At1g20330.1 68414.m02537 S-adenosyl-methionine-sterol-C-methyltr...    26   7.9  

>At2g01460.1 68415.m00069 phosphoribulokinase/uridine kinase family
           protein contains Pfam profile PF00485:
           Phosphoribulokinase / Uridine kinase family
          Length = 723

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 64  YLIETLKKLTTKNIDQHVKHNVLIISSEQFSDVNK 168
           YLI+++  L  K+I+  + H  ++ S  Q SDV K
Sbjct: 214 YLIDSIFPLFRKHIEPDLHHAQIVTSFPQESDVQK 248


>At1g24200.1 68414.m03052 paired amphipathic helix repeat-containing
           protein similar to Sin3 protein [Yarrowia lipolytica]
           GI:18076824; contains Pfam profile PF02671: Paired
           amphipathic helix repeat
          Length = 196

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +3

Query: 207 VSAFAVYRSNKQSNYEKRKINLK 275
           V+ F+VYR  K SN +K+K+NLK
Sbjct: 174 VTKFSVYR--KDSNADKKKMNLK 194


>At1g76090.1 68414.m08836
           S-adenosyl-methionine-sterol-C-methyltransferase
           identical to
           S-adenosyl-methionine-sterol-C-methyltransferase
           GI:2246456 from [Arabidopsis thaliana]
          Length = 359

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 286 LLKSTSDLPKSTFEIPKSSFETETYIRRGDE 378
           +L +    PK T ++ K  F+T  Y+ RG E
Sbjct: 309 ILSAIGVAPKGTVDVHKMLFKTADYLTRGGE 339


>At1g49190.1 68414.m05515 two-component responsive regulator family
           protein / response regulator family protein contains
           Pfam profile: PF00072 response regulator receiver domain
           ;contains similarity to two-component response regulator
           protein (ARR2) GI:4210451 from [Arabidopsis thaliana]
          Length = 608

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 222 VYRSNKQSNYEKRKINLKE*RTPQK 296
           + RSN  S+ +K +INL+E + PQ+
Sbjct: 459 ITRSNVASHLQKHRINLEENQIPQQ 483


>At1g20330.1 68414.m02537
           S-adenosyl-methionine-sterol-C-methyltransferase
           identical to sterol-C-methyltransferase GI:1061040 from
           [Arabidopsis thaliana]
          Length = 361

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 283 ELLKSTSDLPKSTFEIPKSSFETETYIRRGDE 378
           ++L +    PK T ++ +  F+T  Y+ RG E
Sbjct: 308 QILSAVGVAPKGTVDVHEMLFKTADYLTRGGE 339


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,144,270
Number of Sequences: 28952
Number of extensions: 120188
Number of successful extensions: 258
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)