Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30745
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    25   7.0  
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    25   9.3  
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M...    25   9.3  
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        25   9.3  

>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -2

Query: 496 VSLFIKIARTEKYEISHTYREYKGVQNANFFFIM 395
           +S+F  +      E+ HT +E  G+Q   FF ++
Sbjct: 270 MSVFCLLLSVASLELLHTVQEVVGMQAIKFFIVL 303


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 579 WNPTIKMKYYTKSTLS*IF*LIREPQSLYP 490
           WNPT+ M Y ++S        I E +  +P
Sbjct: 131 WNPTVPMAYLSRSLQGLTISKINETEQKFP 160


>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 399 IKKKFAFCTPLYSL*VWEISYFSVRAIFIKRD 494
           ++  F F   LY+    EISY  +  IFI RD
Sbjct: 46  LENSFEFLMQLYAPKNSEISYHRILYIFINRD 77


>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 310 LLFIVKVCS*IENRLILFVLILLVY 236
           LLF+V+VC  ++   +L V +L VY
Sbjct: 30  LLFLVRVCRQLKTVTVLIVPVLPVY 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,498
Number of Sequences: 5004
Number of extensions: 57885
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)