Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30745
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040644-5|AAD34647.1| 1032|Caenorhabditis elegans Hypothetical ...    29   3.7  
U41540-2|AAK39230.1|  444|Caenorhabditis elegans Suppressor/enha...    28   4.9  
U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protei...    28   4.9  
AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin SE...    28   4.9  

>AF040644-5|AAD34647.1| 1032|Caenorhabditis elegans Hypothetical
           protein H04J21.1 protein.
          Length = 1032

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 379 MLIKKNISHSTMYLTHTHAYVYTLLFIVKVCS*IENR 269
           ML+ ++  H      HT  Y+  LL I+++ + IEN+
Sbjct: 393 MLVDRHQVHGNSVFKHTKGYLIGLLDIIRISADIENK 429


>U41540-2|AAK39230.1|  444|Caenorhabditis elegans
           Suppressor/enhancer of lin-12 protein12 protein.
          Length = 444

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/42 (28%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
 Frame = +1

Query: 139 LTIIINLNYKFEHY---YGSIVITSLITDFAKATVYRQVILK 255
           +T+++ + YK++ Y   +G ++++S +  F   T+Y Q +LK
Sbjct: 115 MTVLLIVFYKYKFYKLIHGWLIVSSFLLLFLFTTIYVQEVLK 156


>U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protein
           protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/42 (28%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
 Frame = +1

Query: 139 LTIIINLNYKFEHY---YGSIVITSLITDFAKATVYRQVILK 255
           +T+++ + YK++ Y   +G ++++S +  F   T+Y Q +LK
Sbjct: 115 MTVLLIVFYKYKFYKLIHGWLIVSSFLLLFLFTTIYVQEVLK 156


>AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin
           SEL-12 protein.
          Length = 444

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/42 (28%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
 Frame = +1

Query: 139 LTIIINLNYKFEHY---YGSIVITSLITDFAKATVYRQVILK 255
           +T+++ + YK++ Y   +G ++++S +  F   T+Y Q +LK
Sbjct: 115 MTVLLIVFYKYKFYKLIHGWLIVSSFLLLFLFTTIYVQEVLK 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,783,497
Number of Sequences: 27780
Number of extensions: 315892
Number of successful extensions: 657
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)