Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30744
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   2.1  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    27   2.8  
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    25   6.4  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    25   6.4  
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po...    25   8.5  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   8.5  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 492 LSLRPHSFPHRFATIIPAQAPKTKSRPLSTCLVQENP 602
           LS R ++ PHRF+   P       SR +++  VQ +P
Sbjct: 60  LSKRSNNSPHRFSYSPPQHPASINSRRVASYTVQSSP 96


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 488 SSFIKAPLLPAPVRNHYPRS-SPKNEEQTLVYVFGSRK 598
           +S  K P+LP  + NH PR  S +N  Q  VY+  ++K
Sbjct: 446 NSNTKIPILPKWLSNHIPREISIRNPAQP-VYILANKK 482


>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 502 GPTPSRTGSQPLSPLKPQKR 561
           GP+ S TGS P SP  P  R
Sbjct: 28  GPSQSGTGSIPYSPTSPLSR 47


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 498 LRPHSFPHRFATIIPAQAPKTK 563
           LRPHSFP+     +P   P T+
Sbjct: 134 LRPHSFPNARLAFLPPFLPDTE 155


>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 551 GLSGDNGCEPVREGVGP 501
           G+S D  C PV E VGP
Sbjct: 339 GISWDEECPPVFESVGP 355


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 92   CKCIPPRVWPSRVPQRQ 42
            CK I  R+WP+  P RQ
Sbjct: 1153 CKMIEKRLWPTMSPLRQ 1169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,615,199
Number of Sequences: 5004
Number of extensions: 22928
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)