Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30744
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0341 + 2543845-2543916,2543987-2544199,2544293-2544370,254...    29   2.1  
02_02_0223 - 8021040-8021247,8022275-8022367,8022808-8023059,802...    29   3.7  
11_06_0762 + 27043460-27044319,27052096-27052912,27052992-270536...    28   6.5  

>11_01_0341 +
           2543845-2543916,2543987-2544199,2544293-2544370,
           2544480-2544545,2544707-2544805
          Length = 175

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 247 AKPPPRSTAEAAGAQTARGE 188
           A PPP +T EAA A  A+GE
Sbjct: 16  ASPPPHATQEAAAAAVAKGE 35


>02_02_0223 -
           8021040-8021247,8022275-8022367,8022808-8023059,
           8023143-8023597,8023667-8023983,8024019-8024298,
           8024423-8024728,8024762-8025130,8025216-8025455
          Length = 839

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 464 PSPRSTTKSSFIKAPLLPAPVRNHYPRSSPKNEEQTLVYVFGSRK 598
           P P      S  K P +P  +R+H  +S  +N+E+ +V VF   K
Sbjct: 503 PEPEIFEDPSPAKDPEVPRVLRSHDSKSKDENKEKFMVTVFRGGK 547


>11_06_0762 +
           27043460-27044319,27052096-27052912,27052992-27053649,
           27053698-27053934,27054091-27054161,27054346-27054441
          Length = 912

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 48  LRHSARPDPRRDTLTMRREGPA*EDT 125
           LRH  +  PRR T+T+ R+G    DT
Sbjct: 834 LRHLTKKHPRRPTITLIRDGEEPTDT 859


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,638,320
Number of Sequences: 37544
Number of extensions: 208626
Number of successful extensions: 784
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)