Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30744
         (603 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6176| Best HMM Match : Bromo_TP (HMM E-Value=1.5e-23)               32   0.41 
SB_43124| Best HMM Match : DUF1162 (HMM E-Value=4.3e-17)               30   1.3  
SB_19238| Best HMM Match : DUF729 (HMM E-Value=1.4)                    29   2.2  
SB_30882| Best HMM Match : DUF1694 (HMM E-Value=4.8)                   28   5.1  
SB_3081| Best HMM Match : WHEP-TRS (HMM E-Value=8.8)                   28   5.1  
SB_49598| Best HMM Match : Wound_ind (HMM E-Value=1.8)                 28   6.7  
SB_47643| Best HMM Match : Peptidase_C48 (HMM E-Value=1.5e-05)         28   6.7  

>SB_6176| Best HMM Match : Bromo_TP (HMM E-Value=1.5e-23)
          Length = 684

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 428 LKNSAHK*SAVVPSPRSTTKSSFIKAPLLPAPVRNHYPRS-SPKNEEQTLVYVFGSRKP 601
           LKNS  K  +  PSP S+   S + +P+L    +     S SPK  +QT V V   + P
Sbjct: 311 LKNSKTKSPSATPSPISSPIKSPVTSPILSKAAQQTAKESASPKTPKQTSVKVESLKSP 369


>SB_43124| Best HMM Match : DUF1162 (HMM E-Value=4.3e-17)
          Length = 849

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 95  HCKCIPPRVWPSRVPQRQLIPRM 27
           H +CIP   WPSRVP + L+ R+
Sbjct: 675 HTECIP--FWPSRVPPKDLVVRL 695


>SB_19238| Best HMM Match : DUF729 (HMM E-Value=1.4)
          Length = 647

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = +2

Query: 416 PPQNLKNSAHK*SA----VVPSPRSTTKSSFIKAPLLPAPVRNHYPRSSPKNEEQTLVY 580
           PP +L+ + H  +A    +  +PR       + +P  P   RN+   SSP  E Q  V+
Sbjct: 223 PPPSLEENQHAKTAGNIKLEATPREAPSEGKVGSPSYPLSPRNNQKSSSPSPERQRAVF 281


>SB_30882| Best HMM Match : DUF1694 (HMM E-Value=4.8)
          Length = 172

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +3

Query: 453 QRWCHPPEALQNHLSLRPHSFPHR 524
           QR CHP EA QN  +    SF HR
Sbjct: 75  QRLCHPDEASQNLTNALLTSFTHR 98


>SB_3081| Best HMM Match : WHEP-TRS (HMM E-Value=8.8)
          Length = 324

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +3

Query: 453 QRWCHPPEALQNHLSLRPHSFPHR 524
           QR CHP EA QN  +    SF HR
Sbjct: 206 QRLCHPDEASQNLTNALLTSFTHR 229


>SB_49598| Best HMM Match : Wound_ind (HMM E-Value=1.8)
          Length = 373

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 480 LQNHLSLRPHSFPHRFATIIPAQAP-KTKS 566
           +Q HL  RP   PH  A ++ A +P K KS
Sbjct: 96  VQKHLPKRPSKVPHVLAKVVQAMSPGKRKS 125


>SB_47643| Best HMM Match : Peptidase_C48 (HMM E-Value=1.5e-05)
          Length = 504

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 480 LQNHLSLRPHSFPHRFATIIPAQAP-KTKS 566
           +Q HL  RP   PH  A ++ A +P K KS
Sbjct: 96  VQKHLPKRPSKVPHVLAKVVQAMSPGKRKS 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,260,769
Number of Sequences: 59808
Number of extensions: 204787
Number of successful extensions: 648
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)