Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30744
         (603 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex...    30   1.0  
At5g17890.1 68418.m02098 LIM domain-containing protein / disease...    27   7.2  

>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
           extensin family protein contains similarity to disease
           resistance protein GI:3894383 from [Lycopersicon
           esculentum]; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 847

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +2

Query: 416 PPQNLKNSAHK*SAVVPSPRSTTKSSFIKAPLLPAPVRNHYPRSSPKNEE 565
           PP+  +    K   V+P P  ++K    K P  P+P        SPK EE
Sbjct: 398 PPRTSEPKPSKPEPVMPKPSDSSKPETPKTPEQPSPKPQPPKHESPKPEE 447


>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
            resistance protein-related low similarity to disease
            resistance protein RPP4 [Arabidopsis thaliana]
            GI:20270890; contains Pfam profiles PF00412: LIM domain,
            PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1613

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 465  HPPEALQNHLSLRPHSFPHRFATIIPAQAPKTKSRPLSTCLVQ 593
            HP ++ +NH+S+  H     F T+     P   S  ++ C V+
Sbjct: 981  HPSDSEENHISMWAHEVKFEFHTVSGENNPLGASCKVTECGVE 1023


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,140,164
Number of Sequences: 28952
Number of extensions: 140763
Number of successful extensions: 412
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)