Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30742
(571 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 114 7e-27
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 108 6e-25
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 55 8e-09
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 51 1e-07
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 28 1.1
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 27 1.9
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 4.5
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 5.9
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 25 5.9
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ... 25 5.9
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.8
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 25 7.8
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 25 7.8
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 114 bits (275), Expect = 7e-27
Identities = 62/149 (41%), Positives = 75/149 (50%)
Frame = +3
Query: 81 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAAS 260
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 261 TYPVXXXXXXXXXXXXXXXXAHTDSCFIQNNLLLVRKMRPTTMPVGHYTIGKEIVDLGFG 440
P F L+ ++ GHYT+GKE+VD
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 441 QNPQAR*PVYRSAKDFLIFHFLRGGTGSG 527
+ + + FL+FH GGTGSG
Sbjct: 121 KIRRIA-DNCSGLQGFLVFHSFGGGTGSG 148
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 108 bits (259), Expect = 6e-25
Identities = 64/154 (41%), Positives = 77/154 (50%), Gaps = 5/154 (3%)
Frame = +3
Query: 81 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 245
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 246 TGAASTYPVXXXXXXXXXXXXXXXXAHTDSCFIQNNLLLVRKMRPTTMPVGHYTIGKEIV 425
TG P F ++ ++ GHYT+GKE++
Sbjct: 60 TGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMI 119
Query: 426 DLGFGQNPQAR*PVYRSAKDFLIFHFLRGGTGSG 527
D + + + FL+FH GGTGSG
Sbjct: 120 D-SVLERIRRMADNCSGLQGFLVFHSFGGGTGSG 152
Score = 86.2 bits (204), Expect = 3e-18
Identities = 36/58 (62%), Positives = 45/58 (77%)
Frame = +2
Query: 224 FQHFLQRDRSCKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARG 397
F F K VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARG
Sbjct: 53 FGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARG 110
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 54.8 bits (126), Expect = 8e-09
Identities = 25/54 (46%), Positives = 37/54 (68%)
Frame = +2
Query: 257 KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGSLHHWKG 418
K+VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+G H+ +G
Sbjct: 58 KYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKG--HYTEG 109
Score = 49.6 bits (113), Expect = 3e-07
Identities = 37/149 (24%), Positives = 54/149 (36%)
Frame = +3
Query: 81 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAAS 260
MRE + + GQ G Q+G A W EHG+ G T + N +F+E
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 261 TYPVXXXXXXXXXXXXXXXXAHTDSCFIQNNLLLVRKMRPTTMPVGHYTIGKEIVDLGFG 440
P + F +N++ + GHYT G E+ D
Sbjct: 59 YVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVL- 117
Query: 441 QNPQAR*PVYRSAKDFLIFHFLRGGTGSG 527
+ + + F + H L GGTGSG
Sbjct: 118 DVVRREAEACDALQGFQLTHSLGGGTGSG 146
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 51.2 bits (117), Expect = 1e-07
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Frame = +2
Query: 233 FLQRDRSCKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGSLH 406
F Q D + +++PRA+ +DLEP VV+ + + TY L++PE ++ K A NN+A G H
Sbjct: 52 FYQSDDT-RYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANGYSH 110
Score = 48.8 bits (111), Expect = 6e-07
Identities = 24/55 (43%), Positives = 33/55 (60%)
Frame = +3
Query: 84 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSET 248
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQS 55
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 27.9 bits (59), Expect = 1.1
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -1
Query: 316 ADLINNSRFKIDEDS--TGYVLAAPVSLKKVLKESSP 212
AD+IN SR+ ID S T + P+SL KE P
Sbjct: 455 ADIINGSRYNIDRVSPNTAFSTNIPLSLPFANKEPQP 491
>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 1.9
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -1
Query: 349 FWMKQLSVCASADLINNSRF--KIDEDSTGYVLAAPVSLKKVLKESSPPPMVLSVGIW 182
F + + S +++N+ + KID GY S K + E + P + G+W
Sbjct: 205 FMAPYIELYGSTYIVSNTNYITKIDYSGRGYFRGTKNSFKATIFEKNEDPDYIVEGVW 262
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +2
Query: 179 WPDAHRQDHRGWRRFFQHFLQR 244
W A R D R R FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 5.9
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 70 LKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMARCP 192
L+S +L+ P SR++ P S + STASSL P
Sbjct: 170 LRSSMPLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSP 210
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.4 bits (53), Expect = 5.9
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -1
Query: 283 DEDSTGYVLAAPVSLKKVLKESSPPPMVLSVGIWPSG 173
++D T Y L P+ + L +++PP +V+ +G P G
Sbjct: 834 EKDLTKY-LGPPIYTSQRLYDTTPPGVVMGLGWTPMG 869
>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 25.4 bits (53), Expect = 5.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 440 TESASSLTSVPVCKGFPDLPLPSWRYRLWGSLP 538
TE A + T + KGFPDL + +L +LP
Sbjct: 188 TEEALADTIIVTAKGFPDLMTRKFLVKLAKALP 220
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 7.8
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 160 STASSLMARCPQTRPSGVETILSTLSSARP 249
ST SSL + ++PS T ST SSA P
Sbjct: 173 STFSSLSSSTSSSQPSVSSTSSSTFSSAAP 202
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 25.0 bits (52), Expect = 7.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 134 ITDLDSGLANVYRDALTHFDLSF 66
+T +D GLA YRD TH + +
Sbjct: 146 VTMIDFGLAKKYRDFKTHVHIPY 168
>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 674
Score = 25.0 bits (52), Expect = 7.8
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -1
Query: 490 RKSFADRYTGQRACGFCPKPK 428
RK R T RA G CPKPK
Sbjct: 415 RKIDVARKTLGRALGMCPKPK 435
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,703
Number of Sequences: 5004
Number of extensions: 54518
Number of successful extensions: 174
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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