Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30739
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   3.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.3  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 537 DSYTVSGLRTCFLNFFK 587
           DSY VSG    FL FF+
Sbjct: 446 DSYAVSGFCLLFLMFFE 462


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 537 DSYTVSGLRTCFLNFFK 587
           DSY VSG    FL FF+
Sbjct: 499 DSYAVSGFCLLFLMFFE 515


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -3

Query: 670 VNWNQNWGF 644
           VNW + WGF
Sbjct: 287 VNWGEQWGF 295


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +1

Query: 112 EQELLILRGMDPQQREDRRVRHSSSWSQDGRHLHRKLHRH 231
           +Q  L L+    Q  +D    H+S+  + G     K H+H
Sbjct: 93  QQHSLYLQQQQQQHHQDSSSEHASNQERFGYFSSLKDHQH 132


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 344 SASVNSISSMPSPVYQCKKALR-LNIAVN 261
           +AS NS+ S+P  ++   + LR +++A N
Sbjct: 267 NASYNSLDSLPEGLFASTRDLREIHLAYN 295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,076
Number of Sequences: 438
Number of extensions: 3092
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)