Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30739
(687 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 117 6e-27
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 117 6e-27
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 117 6e-27
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 117 8e-27
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 116 1e-26
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 116 2e-26
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 113 1e-25
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 111 3e-25
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 111 6e-25
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 50 1e-06
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 50 1e-06
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 50 1e-06
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 50 1e-06
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 50 1e-06
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 50 1e-06
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 36 0.025
At1g15400.1 68414.m01844 expressed protein ESTs gb|H37295 and gb... 29 2.2
At1g61850.1 68414.m06979 patatin family protein similar to membr... 28 5.0
At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 / 3-keto... 28 6.7
At5g48880.1 68418.m06046 acetyl-CoA C-acyltransferase 1 / 3-keto... 28 6.7
At5g18475.1 68418.m02177 pentatricopeptide (PPR) repeat-containi... 28 6.7
At1g15400.2 68414.m01845 expressed protein ESTs gb|H37295 and gb... 28 6.7
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 117 bits (282), Expect = 6e-27
Identities = 68/136 (50%), Positives = 84/136 (61%), Gaps = 8/136 (5%)
Frame = +1
Query: 1 NMMAACDPRHGRYLTVAAIFRGRMSMKGGRRANA*HPEQELLILRGMDPQQREDRRVRHS 180
NMM A DPRHGRYLT +A+FRG+MS K ++++L ++ + + +
Sbjct: 298 NMMCAADPRHGRYLTASAMFRGKMSTK--------EVDEQMLNVQNKNSSYFVEWIPNNV 349
Query: 181 SSWSQD----GRHLHRKLHRHPGAVQAHL----EQFTAMFRRKAFLHWYTGEGMDEMEFT 336
S D G + + ++Q EQFTAMFRRKAFLHWYTGEGMDEMEFT
Sbjct: 350 KSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFT 409
Query: 337 EAESNMNDLVSEYQQY 384
EAESNMNDLVSEYQQY
Sbjct: 410 EAESNMNDLVSEYQQY 425
Score = 114 bits (274), Expect = 6e-26
Identities = 49/58 (84%), Positives = 56/58 (96%)
Frame = +2
Query: 80 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRI 253
KEVDEQMLN+QNKNSSYFVEWIPNNVK+ VCDIPP GLKMA+TFIGNST+IQE+F+R+
Sbjct: 324 KEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRV 381
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 117 bits (282), Expect = 6e-27
Identities = 68/136 (50%), Positives = 84/136 (61%), Gaps = 8/136 (5%)
Frame = +1
Query: 1 NMMAACDPRHGRYLTVAAIFRGRMSMKGGRRANA*HPEQELLILRGMDPQQREDRRVRHS 180
NMM A DPRHGRYLT +A+FRG+MS K ++++L ++ + + +
Sbjct: 298 NMMCAADPRHGRYLTASAMFRGKMSTK--------EVDEQMLNVQNKNSSYFVEWIPNNV 349
Query: 181 SSWSQD----GRHLHRKLHRHPGAVQAHL----EQFTAMFRRKAFLHWYTGEGMDEMEFT 336
S D G + + ++Q EQFTAMFRRKAFLHWYTGEGMDEMEFT
Sbjct: 350 KSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFT 409
Query: 337 EAESNMNDLVSEYQQY 384
EAESNMNDLVSEYQQY
Sbjct: 410 EAESNMNDLVSEYQQY 425
Score = 114 bits (274), Expect = 6e-26
Identities = 49/58 (84%), Positives = 56/58 (96%)
Frame = +2
Query: 80 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRI 253
KEVDEQMLN+QNKNSSYFVEWIPNNVK+ VCDIPP GLKMA+TFIGNST+IQE+F+R+
Sbjct: 324 KEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRV 381
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 117 bits (282), Expect = 6e-27
Identities = 68/136 (50%), Positives = 84/136 (61%), Gaps = 8/136 (5%)
Frame = +1
Query: 1 NMMAACDPRHGRYLTVAAIFRGRMSMKGGRRANA*HPEQELLILRGMDPQQREDRRVRHS 180
NMM A DPRHGRYLT +A+FRG+MS K ++++L ++ + + +
Sbjct: 298 NMMCAADPRHGRYLTASAMFRGKMSTK--------EVDEQMLNVQNKNSSYFVEWIPNNV 349
Query: 181 SSWSQD----GRHLHRKLHRHPGAVQAHL----EQFTAMFRRKAFLHWYTGEGMDEMEFT 336
S D G + + ++Q EQFTAMFRRKAFLHWYTGEGMDEMEFT
Sbjct: 350 KSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFT 409
Query: 337 EAESNMNDLVSEYQQY 384
EAESNMNDLVSEYQQY
Sbjct: 410 EAESNMNDLVSEYQQY 425
Score = 114 bits (274), Expect = 6e-26
Identities = 49/58 (84%), Positives = 56/58 (96%)
Frame = +2
Query: 80 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRI 253
KEVDEQMLN+QNKNSSYFVEWIPNNVK+ VCDIPP GLKMA+TFIGNST+IQE+F+R+
Sbjct: 324 KEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRV 381
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 117 bits (281), Expect = 8e-27
Identities = 68/136 (50%), Positives = 84/136 (61%), Gaps = 8/136 (5%)
Frame = +1
Query: 1 NMMAACDPRHGRYLTVAAIFRGRMSMKGGRRANA*HPEQELLILRGMDPQQREDRRVRHS 180
NMM A DPRHGRYLT +AIFRG+MS K ++++L ++ + + +
Sbjct: 299 NMMCAADPRHGRYLTASAIFRGQMSTK--------EVDEQILNIQNKNSSYFVEWIPNNV 350
Query: 181 SSWSQD----GRHLHRKLHRHPGAVQAHL----EQFTAMFRRKAFLHWYTGEGMDEMEFT 336
S D G + + ++Q EQFTAMFRRKAFLHWYTGEGMDEMEFT
Sbjct: 351 KSSVCDIPPKGLKMAATFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFT 410
Query: 337 EAESNMNDLVSEYQQY 384
EAESNMNDLV+EYQQY
Sbjct: 411 EAESNMNDLVAEYQQY 426
Score = 115 bits (277), Expect = 3e-26
Identities = 49/58 (84%), Positives = 58/58 (100%)
Frame = +2
Query: 80 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRI 253
KEVDEQ+LNIQNKNSSYFVEWIPNNVK++VCDIPP+GLKMAATF+GNST+IQE+F+R+
Sbjct: 325 KEVDEQILNIQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMAATFVGNSTSIQEMFRRV 382
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 116 bits (280), Expect = 1e-26
Identities = 66/136 (48%), Positives = 85/136 (62%), Gaps = 8/136 (5%)
Frame = +1
Query: 1 NMMAACDPRHGRYLTVAAIFRGRMSMKGGRRANA*HPEQELLILRGMDPQQRED---RRV 171
NMM A DPRHGRYLT +A+FRG+MS K +++++ ++ + + V
Sbjct: 298 NMMCAADPRHGRYLTASAVFRGKMSTK--------EVDEQMMNVQNKNSSYFVEWIPNNV 349
Query: 172 RHS-SSWSQDGRHLHRKLHRHPGAVQAHL----EQFTAMFRRKAFLHWYTGEGMDEMEFT 336
+ S + G + + ++Q EQFTAMFRRKAFLHWYTGEGMDEMEFT
Sbjct: 350 KSSVCDIAPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFT 409
Query: 337 EAESNMNDLVSEYQQY 384
EAESNMNDLV+EYQQY
Sbjct: 410 EAESNMNDLVAEYQQY 425
Score = 110 bits (265), Expect = 7e-25
Identities = 47/58 (81%), Positives = 56/58 (96%)
Frame = +2
Query: 80 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRI 253
KEVDEQM+N+QNKNSSYFVEWIPNNVK++VCDI P GLKMA+TFIGNST+IQE+F+R+
Sbjct: 324 KEVDEQMMNVQNKNSSYFVEWIPNNVKSSVCDIAPTGLKMASTFIGNSTSIQEMFRRV 381
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 116 bits (278), Expect = 2e-26
Identities = 65/136 (47%), Positives = 85/136 (62%), Gaps = 8/136 (5%)
Frame = +1
Query: 1 NMMAACDPRHGRYLTVAAIFRGRMSMKGGRRANA*HPEQELLILRGMDPQQRED---RRV 171
NMM A DPRHGRYLT +A+FRG++S K +++++ ++ + + V
Sbjct: 298 NMMCAADPRHGRYLTASAVFRGKLSTK--------EVDEQMMNIQNKNSSYFVEWIPNNV 349
Query: 172 RHS-SSWSQDGRHLHRKLHRHPGAVQAHL----EQFTAMFRRKAFLHWYTGEGMDEMEFT 336
+ S + G + + ++Q EQFTAMFRRKAFLHWYTGEGMDEMEFT
Sbjct: 350 KSSVCDIAPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFT 409
Query: 337 EAESNMNDLVSEYQQY 384
EAESNMNDLV+EYQQY
Sbjct: 410 EAESNMNDLVAEYQQY 425
Score = 112 bits (269), Expect = 2e-25
Identities = 48/58 (82%), Positives = 57/58 (98%)
Frame = +2
Query: 80 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRI 253
KEVDEQM+NIQNKNSSYFVEWIPNNVK++VCDI P+GLKMA+TFIGNST+IQE+F+R+
Sbjct: 324 KEVDEQMMNIQNKNSSYFVEWIPNNVKSSVCDIAPKGLKMASTFIGNSTSIQEMFRRV 381
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 113 bits (272), Expect = 1e-25
Identities = 48/58 (82%), Positives = 56/58 (96%)
Frame = +2
Query: 80 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRI 253
KEVDEQM+N+QNKNSSYFVEWIPNNVK+ VCDIPP GLKMA+TFIGNST+IQE+F+R+
Sbjct: 324 KEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRV 381
Score = 113 bits (271), Expect = 1e-25
Identities = 65/136 (47%), Positives = 83/136 (61%), Gaps = 8/136 (5%)
Frame = +1
Query: 1 NMMAACDPRHGRYLTVAAIFRGRMSMKGGRRANA*HPEQELLILRGMDPQQREDRRVRHS 180
NMM A DPRHGRYLT +A+FRG+MS K +++++ ++ + + +
Sbjct: 298 NMMCAADPRHGRYLTASAMFRGKMSTK--------EVDEQMINVQNKNSSYFVEWIPNNV 349
Query: 181 SSWSQD----GRHLHRKLHRHPGAVQAHLEQ----FTAMFRRKAFLHWYTGEGMDEMEFT 336
S D G + + ++Q + FTAMFRRKAFLHWYTGEGMDEMEFT
Sbjct: 350 KSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFT 409
Query: 337 EAESNMNDLVSEYQQY 384
EAESNMNDLVSEYQQY
Sbjct: 410 EAESNMNDLVSEYQQY 425
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 111 bits (268), Expect = 3e-25
Identities = 46/58 (79%), Positives = 57/58 (98%)
Frame = +2
Query: 80 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRI 253
KEVDEQ+LN+QNKNSSYFVEWIPNNVK++VCDIPP G+KMA+TF+GNST+IQE+F+R+
Sbjct: 325 KEVDEQILNVQNKNSSYFVEWIPNNVKSSVCDIPPTGIKMASTFVGNSTSIQEMFRRV 382
Score = 102 bits (244), Expect = 3e-22
Identities = 66/135 (48%), Positives = 76/135 (56%), Gaps = 7/135 (5%)
Frame = +1
Query: 1 NMMAACDPRHGRYLTVAAIFRGRMSMKGGRRANA*HPEQELLILRGMDPQQRE--DRRVR 174
NMM A DPRHGRYLT + +M G+ + EQ L + E V+
Sbjct: 299 NMMCAADPRHGRYLTAS-------AMFRGKMSTKEVDEQILNVQNKNSSYFVEWIPNNVK 351
Query: 175 HS-SSWSQDGRHLHRKLHRHPGAVQAHL----EQFTAMFRRKAFLHWYTGEGMDEMEFTE 339
S G + + ++Q EQFTAMFRRKAFLHWYTGEGMDEMEFTE
Sbjct: 352 SSVCDIPPTGIKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTE 411
Query: 340 AESNMNDLVSEYQQY 384
AESNMNDLVSEYQQY
Sbjct: 412 AESNMNDLVSEYQQY 426
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 111 bits (266), Expect = 6e-25
Identities = 47/58 (81%), Positives = 56/58 (96%)
Frame = +2
Query: 80 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRI 253
KEVDEQM+N+QNKNSSYFVEWIPNNVK++VCDI PRGL MA+TFIGNST+IQE+F+R+
Sbjct: 324 KEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPRGLSMASTFIGNSTSIQEMFRRV 381
Score = 108 bits (260), Expect = 3e-24
Identities = 67/135 (49%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Frame = +1
Query: 1 NMMAACDPRHGRYLTVAAIFRGRMSMKGGRRANA*HPEQELLILRGMDPQQRE--DRRVR 174
NMM A DPRHGRYLT +A+FR G+ + EQ + + E V+
Sbjct: 298 NMMCAADPRHGRYLTASAMFR-------GKMSTKEVDEQMINVQNKNSSYFVEWIPNNVK 350
Query: 175 HS-SSWSQDGRHLHRKLHRHPGAVQAHL----EQFTAMFRRKAFLHWYTGEGMDEMEFTE 339
S + G + + ++Q EQFTAMFRRKAFLHWYTGEGMDEMEFTE
Sbjct: 351 SSVCDIAPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTE 410
Query: 340 AESNMNDLVSEYQQY 384
AESNMNDLVSEYQQY
Sbjct: 411 AESNMNDLVSEYQQY 425
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 50.0 bits (114), Expect = 1e-06
Identities = 18/41 (43%), Positives = 30/41 (73%)
Frame = +1
Query: 259 QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 381
+F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 394 KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
Score = 35.9 bits (79), Expect = 0.025
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 1 NMMAACDPRHGRYLTVAAIFRG 66
+MMA CDPRHG+Y+ ++RG
Sbjct: 300 SMMAKCDPRHGKYMACCLMYRG 321
Score = 33.9 bits (74), Expect = 0.10
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Frame = +2
Query: 80 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMAATFIGNSTAIQ 235
K+V+ + I+ K + FV+W P K + PP ++ A I N+TA+
Sbjct: 326 KDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVA 385
Query: 236 ELFKRI 253
E+F RI
Sbjct: 386 EVFSRI 391
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 50.0 bits (114), Expect = 1e-06
Identities = 18/41 (43%), Positives = 30/41 (73%)
Frame = +1
Query: 259 QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 381
+F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 394 KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
Score = 35.9 bits (79), Expect = 0.025
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 1 NMMAACDPRHGRYLTVAAIFRG 66
+MMA CDPRHG+Y+ ++RG
Sbjct: 300 SMMAKCDPRHGKYMACCLMYRG 321
Score = 33.9 bits (74), Expect = 0.10
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Frame = +2
Query: 80 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMAATFIGNSTAIQ 235
K+V+ + I+ K + FV+W P K + PP ++ A I N+TA+
Sbjct: 326 KDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVA 385
Query: 236 ELFKRI 253
E+F RI
Sbjct: 386 EVFSRI 391
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 50.0 bits (114), Expect = 1e-06
Identities = 18/41 (43%), Positives = 30/41 (73%)
Frame = +1
Query: 259 QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 381
+F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 394 KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
Score = 35.9 bits (79), Expect = 0.025
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 1 NMMAACDPRHGRYLTVAAIFRG 66
+MMA CDPRHG+Y+ ++RG
Sbjct: 300 SMMAKCDPRHGKYMACCLMYRG 321
Score = 33.9 bits (74), Expect = 0.10
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Frame = +2
Query: 80 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMAATFIGNSTAIQ 235
K+V+ + I+ K + FV+W P K + PP ++ A I NST++
Sbjct: 326 KDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVA 385
Query: 236 ELFKRI 253
E+F RI
Sbjct: 386 EVFSRI 391
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 50.0 bits (114), Expect = 1e-06
Identities = 18/41 (43%), Positives = 30/41 (73%)
Frame = +1
Query: 259 QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 381
+F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 394 KFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
Score = 37.9 bits (84), Expect = 0.006
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +1
Query: 1 NMMAACDPRHGRYLTVAAIFRG 66
NMMA CDPRHG+Y+ ++RG
Sbjct: 300 NMMAKCDPRHGKYMACCLMYRG 321
Score = 33.5 bits (73), Expect = 0.13
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Frame = +2
Query: 80 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMAATFIGNSTAIQ 235
K+V+ + I+ K + FV+W P K + PP ++ A I N+TA+
Sbjct: 326 KDVNTAVAAIKAKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVA 385
Query: 236 ELFKRI 253
E+F RI
Sbjct: 386 EVFSRI 391
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 50.0 bits (114), Expect = 1e-06
Identities = 18/41 (43%), Positives = 30/41 (73%)
Frame = +1
Query: 259 QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 381
+F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 394 KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
Score = 35.9 bits (79), Expect = 0.025
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 1 NMMAACDPRHGRYLTVAAIFRG 66
+MMA CDPRHG+Y+ ++RG
Sbjct: 300 SMMAKCDPRHGKYMACCLMYRG 321
Score = 33.9 bits (74), Expect = 0.10
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Frame = +2
Query: 80 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMAATFIGNSTAIQ 235
K+V+ + I+ K + FV+W P K + PP ++ A I NST++
Sbjct: 326 KDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVA 385
Query: 236 ELFKRI 253
E+F RI
Sbjct: 386 EVFSRI 391
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 50.0 bits (114), Expect = 1e-06
Identities = 18/41 (43%), Positives = 30/41 (73%)
Frame = +1
Query: 259 QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 381
+F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 394 KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
Score = 35.9 bits (79), Expect = 0.025
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 1 NMMAACDPRHGRYLTVAAIFRG 66
+MMA CDPRHG+Y+ ++RG
Sbjct: 300 SMMAKCDPRHGKYMACCLMYRG 321
Score = 33.9 bits (74), Expect = 0.10
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Frame = +2
Query: 80 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMAATFIGNSTAIQ 235
K+V+ + I+ K + FV+W P K + PP ++ A I NST++
Sbjct: 326 KDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVA 385
Query: 236 ELFKRI 253
E+F RI
Sbjct: 386 EVFSRI 391
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 35.9 bits (79), Expect = 0.025
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 1 NMMAACDPRHGRYLTVAAIFRG 66
+MMA CDPRHG+Y+ ++RG
Sbjct: 300 SMMAKCDPRHGKYMACCLMYRG 321
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Frame = +2
Query: 80 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMAATFIGNSTAIQ 235
K+V+ + I+ K + FV+W P K + PP ++ A I NST++
Sbjct: 326 KDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVA 385
Query: 236 E 238
E
Sbjct: 386 E 386
>At1g15400.1 68414.m01844 expressed protein ESTs gb|H37295 and
gb|R64895 come from this gene
Length = 145
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = -2
Query: 137 PRSMRSSCSGC*AFARRPPFMDMRPRKMAATVR*RPWRGS 18
P SSC C AF + PP + PRK R R GS
Sbjct: 106 PSPRISSCGCCSAFGKNPPGKKVNPRKRPPKRRSREGGGS 145
>At1g61850.1 68414.m06979 patatin family protein similar to
membrane-associated calcium-independent phospholipase A2
gamma; IPLA2 gamma [Homo sapiens] GI:8453174; contains
Patatin domain PF01734, PF00514:
Armadillo/beta-catenin-like repeat
Length = 1265
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 509 VTFCLSNRK*FLYSVRIEDMLSKLF*TEQPRL 604
+ FCL NR+ + S + ++L +L T +PR+
Sbjct: 391 LAFCLENRRILITSESLRELLMRLIVTPEPRV 422
>At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 /
3-ketoacyl-CoA thiolase 1 (PKT1) identical to
3-keto-acyl-CoA-thiolase 1 [Arabidopsis thaliana]
GI:3169568
Length = 457
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = -1
Query: 201 AILRPRGGMSHTAVFTLLGIHSTKYEEFLFWMLSICSSTSFHGHATAEDGSDGEVAAVAR 22
AI P G V TLL + ++ F ++S+C T A E G + + AR
Sbjct: 391 AIGHPLGATGARCVATLLHEMKRRGKDCRFGVISMCIGTGMGAAAVFERGDSVDNLSNAR 450
Query: 21 VTGG 10
V G
Sbjct: 451 VANG 454
>At5g48880.1 68418.m06046 acetyl-CoA C-acyltransferase 1 /
3-ketoacyl-CoA thiolase 1 (PKT1) identical to
3-keto-acyl-CoA-thiolase 1 [Arabidopsis thaliana]
GI:3169568
Length = 414
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = -1
Query: 201 AILRPRGGMSHTAVFTLLGIHSTKYEEFLFWMLSICSSTSFHGHATAEDGSDGEVAAVAR 22
AI P G V TLL + ++ F ++S+C T A E G + + AR
Sbjct: 348 AIGHPLGATGARCVATLLHEMKRRGKDCRFGVISMCIGTGMGAAAVFERGDSVDNLSNAR 407
Query: 21 VTGG 10
V G
Sbjct: 408 VANG 411
>At5g18475.1 68418.m02177 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 506
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +1
Query: 124 LILRGMDPQQREDRRVRHSSSWSQDGRHLHRKLHR 228
+ILRG+ + R + ++ W +G HL++ +R
Sbjct: 378 VILRGLSSEGRSEEALQMLDQWGSEGVHLNKGSYR 412
>At1g15400.2 68414.m01845 expressed protein ESTs gb|H37295 and
gb|R64895 come from this gene
Length = 140
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 137 PRSMRSSCSGC*AFARRPPFMDMRPRK 57
P SSC C AF + PP + PRK
Sbjct: 106 PSPRISSCGCCSAFGKNPPGKKVNPRK 132
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,159,319
Number of Sequences: 28952
Number of extensions: 243322
Number of successful extensions: 780
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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