Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30738
         (646 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   1.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   6.6  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   8.7  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +2

Query: 194 PALQGYRRCLRPYPQGAGSPSFWRGNFANVIRY-FPTQALNFAFKDKYKQ 340
           P +  YR C RPYP       +W G  +   +Y F      ++F  + K+
Sbjct: 251 PYVPFYRYCYRPYPV---YNQWWSGPLSMYYQYPFGLPEYEYSFYQEVKK 297


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 479 DVGKGDGQRESPVSETASAR 538
           D G G  Q ESP S +++ R
Sbjct: 413 DGGSGQNQPESPESSSSTPR 432


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 362 CQHRRGTPACTCP 324
           CQ + G  AC CP
Sbjct: 432 CQDKLGDYACYCP 444


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,996
Number of Sequences: 336
Number of extensions: 2513
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)