Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30738
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    98   1e-21
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    44   1e-05
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    41   2e-04
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    34   0.020
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c...    34   0.020
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats...    33   0.035
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c...    31   0.19 
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    30   0.25 
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    29   0.57 
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    29   0.57 
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    29   0.57 
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    28   1.3  
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    26   4.0  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   5.3  

>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 97.9 bits (233), Expect = 1e-21
 Identities = 59/161 (36%), Positives = 85/161 (52%), Gaps = 7/161 (4%)
 Frame = +2

Query: 176 QADRRRPALQGYRRCLRPYPQGAGSPSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGG 355
           +A R     +G   C +      G  S WRGN ANV+RYFPTQALNFAFKDK+K++F G 
Sbjct: 63  RAGRLSHRYKGIGECFKRTAAEEGVISLWRGNTANVLRYFPTQALNFAFKDKFKKMF-GY 121

Query: 356 VDKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADV--GKGDGQRESPVSETA 529
             ++  + ++F             SL FVY LD+ARTRLA D    K  G+R+       
Sbjct: 122 KKERDGYAKWFAGNLASGGAAGAASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDV 181

Query: 530 SARIFKSDGLIGLVQRF-----SVYPFKGIII*RWPSILPV 637
             + ++SDGL GL + F      +  ++G+    + ++ PV
Sbjct: 182 YRKTYRSDGLRGLYRGFGPSVVGIVVYRGLYFGMYDTLKPV 222



 Score = 62.5 bits (145), Expect = 5e-11
 Identities = 33/62 (53%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
 Frame = +3

Query: 72  FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQG 248
           F  DF+ GG+SAAVSKTA APIERVKLL+Q Q  + +      RYKGI + F R   E+G
Sbjct: 27  FFFDFMMGGVSAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEG 86

Query: 249 LL 254
           ++
Sbjct: 87  VI 88



 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/60 (23%), Positives = 29/60 (48%)
 Frame = +3

Query: 72  FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 251
           FA +  +GG + A S   V  ++  +  L     S +   ++++ G+VD + +  +  GL
Sbjct: 132 FAGNLASGGAAGAASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGL 191


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 21/56 (37%), Positives = 37/56 (66%)
 Frame = +3

Query: 87  LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLL 254
           L+GG++A VS+TAV+P+ER+K++ QVQ+       ++ Y  +    V+I   +GL+
Sbjct: 25  LSGGVAATVSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLI 73


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 23/58 (39%), Positives = 33/58 (56%)
 Frame = +3

Query: 78  KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 251
           K  +AGG +  V+K+ VAP++RVK+L Q  H S +  A  R+ G+  A   I    GL
Sbjct: 19  KSGIAGGTAGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGL 75



 Score = 31.1 bits (67), Expect = 0.14
 Identities = 19/77 (24%), Positives = 34/77 (44%)
 Frame = +2

Query: 245 GSPSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXX 424
           G    ++G+ A + R FP   + F   ++ ++V +   + +T   R+             
Sbjct: 74  GLHGLYQGHTATLYRVFPYAGIKFVAYEQVRRVLIRDPEHETHARRFLSGSLAGTC---- 129

Query: 425 TSLCFVYPLDFARTRLA 475
            S+ F YPL+  R RLA
Sbjct: 130 -SVFFTYPLELIRVRLA 145


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 33.9 bits (74), Expect = 0.020
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +3

Query: 60  DPVAFAKDFLAGGISAAVSKTAVAPIERVKLLL 158
           DP      F++GGI+  VS+T  AP++R+K++L
Sbjct: 123 DPKNNVGYFISGGIAGIVSRTCTAPLDRLKVML 155



 Score = 27.1 bits (57), Expect = 2.3
 Identities = 9/32 (28%), Positives = 22/32 (68%)
 Frame = +3

Query: 84  FLAGGISAAVSKTAVAPIERVKLLLQVQHVSK 179
           +LAGG++ +V++  + P++ +K  +Q   +S+
Sbjct: 232 YLAGGMAGSVAQMFIYPVDTLKFRIQCSDLSR 263


>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 33.9 bits (74), Expect = 0.020
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 84  FLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGL 251
           FL+GG++A  + T   P E +K   Q+Q  ++K   + + YK +  AF  I + +G+
Sbjct: 27  FLSGGLAACGAVTLTNPFEVIKTRFQLQGQLTKLDPSKRIYKSVGQAFSLIARHEGI 83


>SPAC4G9.20c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 33.1 bits (72), Expect = 0.035
 Identities = 21/69 (30%), Positives = 35/69 (50%)
 Frame = +3

Query: 63  PVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKE 242
           PV   + +++G IS   +   V P+E V++ LQ+Q   K +     Y G  D   +I  +
Sbjct: 109 PVTMPQYYVSGAISGLANSFLVGPVEHVRIRLQIQ-TGKNVL----YHGPWDCIKKISSQ 163

Query: 243 QGLLHSGVV 269
            GL  SG++
Sbjct: 164 YGL--SGIM 170



 Score = 31.5 bits (68), Expect = 0.11
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 69  AFAKDFLAGGISAAVSKTAVA-PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQ 245
           +F KDFLA G+S  V++  V  P + VK+ LQ Q     I     Y   +D   +I K +
Sbjct: 16  SFTKDFLA-GVSGGVAQVLVGQPFDCVKVRLQSQSNVSPI-----YNNALDCVKKISKNE 69

Query: 246 GL 251
           GL
Sbjct: 70  GL 71


>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 303

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +3

Query: 87  LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVD 218
           ++GG+S A++ +   P++ VK LLQ +  S  I   ++ KG +D
Sbjct: 209 ISGGLSGAIASSLTTPLDVVKTLLQTRG-SSSIPEVRKCKGSLD 251


>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +3

Query: 21  VKIT*SNKMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQ 161
           V +T +N  SN   P   +  F+AGG++  +   A AP++ VK  LQ
Sbjct: 32  VLLTKANNASNERAPPPLSH-FIAGGVAGMLGAIATAPLDVVKTRLQ 77


>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 75  AKDFLAGGISAAVSKTAVAPIERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQGL 251
           A   L G  +       V P E +K+ LQ V++ SK       Y G VD F +I K++ +
Sbjct: 105 ALSILTGSCAGFTETFVVVPFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQERI 157

Query: 252 L 254
           L
Sbjct: 158 L 158



 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +2

Query: 170 RQQADRRRPALQGYRRCLRPYPQGAGSPSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 346
           R Q    +    G   CL+   +  G    +RG    ++   P +AL FA  D Y +++
Sbjct: 35  RMQLSVGKSDYNGTFDCLKKIVKNEGPHRLYRGILPPILMEAPKRALKFASNDTYSKLW 93



 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 440 VYPLDFARTRLAADVGKGD 496
           +YPLD  +TR+   VGK D
Sbjct: 26  LYPLDVVKTRMQLSVGKSD 44


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 19/53 (35%), Positives = 23/53 (43%)
 Frame = -3

Query: 506 HAGHLPYRHRRRDGYVRSRGGTRSTERWLRRHHRRPDYQRSNARTASSCQHRR 348
           H    P R R RD   RS   +RS     R  HR  DY RS   ++   + RR
Sbjct: 140 HQSRSPVRSRDRD---RSSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSRR 189


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 87  LAGGISAAVSKTAVAPIERVKLLLQVQHVS 176
           LAGGIS+ + +  +AP + +K+ +Q+   S
Sbjct: 21  LAGGISSVICRFMIAPFDVIKIRMQITQSS 50


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 78  KDFLAGGISAAVSKTAVAPIERVKLLLQVQ 167
           KD +AGG +   S   VAP++ VK   Q Q
Sbjct: 7   KDAIAGGAAGLASSLVVAPLDVVKTRKQAQ 36


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -3

Query: 488 YRHRRRDGYVRSRGGTRSTERWLRRHHRRPD--YQRSNARTASSCQHRR 348
           YR        R R  +RS +R    +HRR D  Y RSN R     +HRR
Sbjct: 326 YRQYYNSNRDRKRSSSRSDDR---EYHRRSDGRYDRSNYR--DDYRHRR 369


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 226 TKASTIPL*RWSAAICLLTCCTWSSSLTRSMGATAV 119
           T+ + + +  WSA I +LT C    SLT S+  T +
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDI 568


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,316,238
Number of Sequences: 5004
Number of extensions: 40916
Number of successful extensions: 142
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)