Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30738
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   163   1e-42
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   163   1e-42
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.4  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  163 bits (397), Expect = 1e-42
 Identities = 84/138 (60%), Positives = 93/138 (67%)
 Frame = +2

Query: 203 QGYRRCLRPYPQGAGSPSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWR 382
           +G   C    P+  G  S+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF R
Sbjct: 54  KGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLR 113

Query: 383 YFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKGDGQRESPVSETASARIFKSDGLI 562
           YF            TSLCFVYPLDFARTRLAADVGK  G+RE         +IFK+DG+ 
Sbjct: 114 YFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGIT 173

Query: 563 GLVQRFSVYPFKGIII*R 616
           GL + F V   +GIII R
Sbjct: 174 GLYRGFGV-SVQGIIIYR 190



 Score =  124 bits (298), Expect = 1e-30
 Identities = 57/70 (81%), Positives = 65/70 (92%)
 Frame = +3

Query: 45  MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 224
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 225 VRIPKEQGLL 254
           VRIPKEQG L
Sbjct: 61  VRIPKEQGFL 70


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  163 bits (397), Expect = 1e-42
 Identities = 84/138 (60%), Positives = 93/138 (67%)
 Frame = +2

Query: 203 QGYRRCLRPYPQGAGSPSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWR 382
           +G   C    P+  G  S+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF R
Sbjct: 54  KGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLR 113

Query: 383 YFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKGDGQRESPVSETASARIFKSDGLI 562
           YF            TSLCFVYPLDFARTRLAADVGK  G+RE         +IFK+DG+ 
Sbjct: 114 YFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGIT 173

Query: 563 GLVQRFSVYPFKGIII*R 616
           GL + F V   +GIII R
Sbjct: 174 GLYRGFGV-SVQGIIIYR 190



 Score =  124 bits (298), Expect = 1e-30
 Identities = 57/70 (81%), Positives = 65/70 (92%)
 Frame = +3

Query: 45  MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 224
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 225 VRIPKEQGLL 254
           VRIPKEQG L
Sbjct: 61  VRIPKEQGFL 70


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 233 PQGAGSPSFW 262
           P GAG P+FW
Sbjct: 324 PLGAGRPAFW 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,793
Number of Sequences: 438
Number of extensions: 3085
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)