Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30736
         (729 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39978| Best HMM Match : 7tm_1 (HMM E-Value=8.54792e-44)             32   0.41 
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)                      30   1.7  

>SB_39978| Best HMM Match : 7tm_1 (HMM E-Value=8.54792e-44)
          Length = 429

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
 Frame = -2

Query: 479 RAYWLILMLFLSLNSRHKFAL--FFCRMVVLDTLPLFWAVASRYLNFQITLHSTTIVVKP 306
           + +WL+ + F+SL+S    AL  +FC +       L    AS      + + +   V  P
Sbjct: 162 QGFWLLFLGFVSLHSMALTALNRYFCVVRPEMYRRLCTRKASLIKLSVVWVFALASVAIP 221

Query: 305 SLSR--SFFFSQTKVIN*IITVIYLLRLTYTLFSILIIVVEKHFFLLQCH*K 156
             S+  SF F   +    I  V + + + YT+FS+++ +      ++ C+ K
Sbjct: 222 QFSKNISFRFQANRAACFITLVDFTVNMVYTVFSLVVFIAPTLGIIVGCYTK 273


>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
          Length = 1291

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
 Frame = -2

Query: 464  ILMLFLSLNSRHKFALFFCRMVVLDTLPLFWAVASRYLNFQITLHSTTIVVKPSLSRSFF 285
            +++LF+++     F++    + V   + LF  V S  + F IT+ S TI+     S +  
Sbjct: 1114 VIILFITV-----FSVIILFITVFSVIILFITVFSVIILF-ITVFSVTILFITVFSVTIL 1167

Query: 284  FSQT-KVIN*IITVIYLLRLTYTLFSILIIVV 192
            F     VI   ITV  ++ L  T+FSI+I+++
Sbjct: 1168 FITVFSVIILFITVFSVIILFITVFSIIILLL 1199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,867,557
Number of Sequences: 59808
Number of extensions: 399127
Number of successful extensions: 730
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)