Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30736
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66562-4|CAA91465.1|  258|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z82274-7|CAD21646.1|  331|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z66562-4|CAA91465.1|  258|Caenorhabditis elegans Hypothetical
           protein F42E11.3 protein.
          Length = 258

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 428 KFALFFCRMVVLDTLPLFWAVASRYLNFQI 339
           KF +  C  +V   +PL+W V S +L  QI
Sbjct: 99  KFVISICDRLVTAQMPLYWFVVSAFLIIQI 128


>Z82274-7|CAD21646.1|  331|Caenorhabditis elegans Hypothetical
           protein JC8.13 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = -2

Query: 347 FQITLHSTTIVVKPSLSRSFFFSQTKVIN*IITVIYLLR--LTYTLFSILIIVVEKHF 180
           F+   +ST I+  P +S  FFF Q    + I+  +YL R  L +  F+++  ++   +
Sbjct: 169 FEEVSNSTDIIPNPLISACFFFRQLHRKSSILHDLYLFRRKLPHESFNLIQSIISSFY 226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,955,102
Number of Sequences: 27780
Number of extensions: 319131
Number of successful extensions: 615
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)