Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30736
         (729 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14220.1 68418.m01661 protoporphyrinogen oxidase, putative si...    29   4.2  
At3g01900.1 68416.m00137 cytochrome P450 family protein similar ...    27   9.6  

>At5g14220.1 68418.m01661 protoporphyrinogen oxidase, putative
           similar to protoporphyrinogen IX oxidase, mitochondrial
           (PPO II) from Nicotiana tabacum [SP|O24164], Glycine
           max, AB025102, Spinacia oleracea [GI:14349153]; contains
           Pfam amine oxidase, flavin-containing domain [PF015930]
          Length = 508

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +1

Query: 442 RDKNSIRISQ*ARCIVRELLPHKIGTDSLRLT*RSFFSVQTCFWVYLK 585
           R+K    ISQ  R IVR  +P  + T+ + L   S  S Q+ F + L+
Sbjct: 89  REKQQFPISQKKRYIVRNGVPVMLPTNPIELVTSSVLSTQSKFQILLE 136


>At3g01900.1 68416.m00137 cytochrome P450 family protein similar to
           Cytochrome P450 94A1  (P450-dependent fatty acid
           omega-hydroxylase) (SP:O81117) {Vicia sativa}; contains
           Pfam profile: PF00067 cytochrome P450
          Length = 496

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = -2

Query: 467 LILMLFLSLNSRHKFALFFCRMVVLDTLPLFWAVASRYLNFQITLHSTTIVVKPSLSRS 291
           L+L+L L L S  K  ++ CR     T P+   + S Y N    L   T ++  S SR+
Sbjct: 8   LLLVLVLLLVSAGKHVIYSCRNSTPKTYPVIGCLISFYTNRNRLLDWYTELLTESPSRT 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,941,825
Number of Sequences: 28952
Number of extensions: 292118
Number of successful extensions: 601
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)