Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30735
         (625 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    24   0.90 
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   3.6  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   8.4  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 24.2 bits (50), Expect = 0.90
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 422 GDMRSPSGCTCRTSSQSPVPA--PIAALQGLAAV 327
           G + SPSG T   SS SP P   P++  + L ++
Sbjct: 55  GSLLSPSGNTPNKSSTSPYPPNHPLSGSKHLCSI 88


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = -1

Query: 298 CSMVYLENYNEFKFTFPIQVRVFSLIRSSHAFSCFHILNTLSIN 167
           C  V+LE     KFT P+   V   I    A S   I+     N
Sbjct: 207 CFQVFLEGERRGKFTVPLTPVVSEPIYDKKAMSDLMIVKLSHCN 250


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 592 VCGPLVRIFGFPL 554
           +CG +  +FGFP+
Sbjct: 245 MCGAINMLFGFPI 257


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,972
Number of Sequences: 336
Number of extensions: 3480
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)