BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30735 (625 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC222.03c |tim10||Tim9-Tim10 complex subunit Tim10|Schizosacch... 78 1e-15 SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex... 31 0.14 SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 28 0.95 SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 27 2.9 SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s... 26 3.8 SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc... 26 5.1 SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 5.1 SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 6.7 SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 6.7 SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 6.7 >SPAC222.03c |tim10||Tim9-Tim10 complex subunit Tim10|Schizosaccharomyces pombe|chr 1|||Manual Length = 89 Score = 77.8 bits (183), Expect = 1e-15 Identities = 31/57 (54%), Positives = 46/57 (80%) Frame = +2 Query: 335 LDPAKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAQY 505 ++P + + ++ E+EMMSD++NRLV CH+KCI KY+E +L KGESVC+DRCV++Y Sbjct: 13 INPQNIAMAEQ-EVEMMSDIFNRLVMTCHKKCISPKYYEADLTKGESVCIDRCVSKY 68 >SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual Length = 95 Score = 31.1 bits (67), Expect = 0.14 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Frame = +2 Query: 353 QLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEP--ELGKGESVCLDRCVAQYLTYMN 520 Q+ QEL + ++ +++ C KCIP EP E C+ +C+ +Y+ N Sbjct: 24 QIRQELAVAQAGELISKINENCFDKCIP----EPGSTFDPNEKSCVSKCMERYMDAWN 77 >SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual Length = 797 Score = 28.3 bits (60), Expect = 0.95 Identities = 12/49 (24%), Positives = 26/49 (53%) Frame = +2 Query: 326 VPQLDPAKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGE 472 +P ++ ++ ++ ++ +SDM V A IP++Y +P L G+ Sbjct: 78 LPTINMGRMTMLDAIKSNYISDMSKADVDAVFDSIIPLRYQQPTLLLGK 126 >SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizosaccharomyces pombe|chr 1|||Manual Length = 532 Score = 26.6 bits (56), Expect = 2.9 Identities = 18/80 (22%), Positives = 39/80 (48%) Frame = +2 Query: 188 NMKARERMRRSNQGEYPDLYRKCELEFIIIFQIYH*TLLS*NVKMAVPQLDPAKLQLVQE 367 N K +M +++ E D +++ + E I+ Q++H +++ VP+ L+ + + Sbjct: 46 NEKVALKMVYNDELEDKDTWKRLQREVTILRQLHHPNIITLYQVFRVPKYTVLALEYM-D 104 Query: 368 LEIEMMSDMYNRLVSACHRK 427 ++ M +NRL RK Sbjct: 105 TDLHSMVVKHNRLDECTTRK 124 >SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual Length = 98 Score = 26.2 bits (55), Expect = 3.8 Identities = 16/59 (27%), Positives = 31/59 (52%) Frame = +2 Query: 332 QLDPAKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAQYL 508 QL+ +K ++ ++++ ++ + S C KCI ++ L K E CL CV ++L Sbjct: 17 QLELSKFIESEQQKVKLQQAIH-QFTSTCWPKCIGNIGNK--LDKSEEQCLQNCVERFL 72 >SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosaccharomyces pombe|chr 1|||Manual Length = 259 Score = 25.8 bits (54), Expect = 5.1 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%) Frame = -1 Query: 334 LRYCHLYVLTK*CSMVYLENYNEFKFTFP-IQ--VRVFSLIRSSHAFSC--FHILNTLSI 170 LR C++ + CS V L N + FTFP IQ + + + S+ SC F + ++ ++ Sbjct: 151 LRSCNISISN--CSSVNLHNATKCNFTFPTIQGSIHLSDINDSTICVSCHQFRLHHSTNL 208 Query: 169 NVVLR 155 V LR Sbjct: 209 RVHLR 213 >SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizosaccharomyces pombe|chr 2|||Manual Length = 932 Score = 25.8 bits (54), Expect = 5.1 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = -1 Query: 565 GFPLGDIWEKFLTLCVHVRQ 506 GF L I +F+ LCVH+R+ Sbjct: 45 GFSLEPIMMRFIELCVHLRK 64 >SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1687 Score = 25.4 bits (53), Expect = 6.7 Identities = 10/33 (30%), Positives = 18/33 (54%) Frame = +3 Query: 150 WWRRTTLILSVLRI*KQENACEDLIKENTLTCI 248 +W RT + L +L + ACE ++K+ L + Sbjct: 226 FWERTYMFLELLPLQSITAACESILKDYLLNLV 258 >SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosaccharomyces pombe|chr 2|||Manual Length = 2335 Score = 25.4 bits (53), Expect = 6.7 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = -1 Query: 595 RVCGPLVRIFGFPLGDIWEKFL-TLCVHVRQVLGY 494 R+ PLVR+ G GD+ + TLC V Q LGY Sbjct: 1009 RIIHPLVRMLGKSNGDLRAVIMDTLCAIVSQ-LGY 1042 >SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1436 Score = 25.4 bits (53), Expect = 6.7 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 2/28 (7%) Frame = +3 Query: 171 ILSVLRI*KQ--ENACEDLIKENTLTCI 248 ++S RI K EN+CE +IKEN+L+ + Sbjct: 730 LMSFTRILKAHLENSCEYVIKENSLSLL 757 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,686,452 Number of Sequences: 5004 Number of extensions: 54280 Number of successful extensions: 151 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 148 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 151 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 275671126 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -