Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30735
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.03c |tim10||Tim9-Tim10 complex subunit Tim10|Schizosacch...    78   1e-15
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex...    31   0.14 
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    28   0.95 
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    27   2.9  
SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s...    26   3.8  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    26   5.1  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   5.1  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   6.7  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   6.7  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   6.7  

>SPAC222.03c |tim10||Tim9-Tim10 complex subunit
           Tim10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 77.8 bits (183), Expect = 1e-15
 Identities = 31/57 (54%), Positives = 46/57 (80%)
 Frame = +2

Query: 335 LDPAKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAQY 505
           ++P  + + ++ E+EMMSD++NRLV  CH+KCI  KY+E +L KGESVC+DRCV++Y
Sbjct: 13  INPQNIAMAEQ-EVEMMSDIFNRLVMTCHKKCISPKYYEADLTKGESVCIDRCVSKY 68


>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
           subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 95

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +2

Query: 353 QLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEP--ELGKGESVCLDRCVAQYLTYMN 520
           Q+ QEL +    ++ +++   C  KCIP    EP       E  C+ +C+ +Y+   N
Sbjct: 24  QIRQELAVAQAGELISKINENCFDKCIP----EPGSTFDPNEKSCVSKCMERYMDAWN 77


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +2

Query: 326 VPQLDPAKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGE 472
           +P ++  ++ ++  ++   +SDM    V A     IP++Y +P L  G+
Sbjct: 78  LPTINMGRMTMLDAIKSNYISDMSKADVDAVFDSIIPLRYQQPTLLLGK 126


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 18/80 (22%), Positives = 39/80 (48%)
 Frame = +2

Query: 188 NMKARERMRRSNQGEYPDLYRKCELEFIIIFQIYH*TLLS*NVKMAVPQLDPAKLQLVQE 367
           N K   +M  +++ E  D +++ + E  I+ Q++H  +++      VP+     L+ + +
Sbjct: 46  NEKVALKMVYNDELEDKDTWKRLQREVTILRQLHHPNIITLYQVFRVPKYTVLALEYM-D 104

Query: 368 LEIEMMSDMYNRLVSACHRK 427
            ++  M   +NRL     RK
Sbjct: 105 TDLHSMVVKHNRLDECTTRK 124


>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
           subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/59 (27%), Positives = 31/59 (52%)
 Frame = +2

Query: 332 QLDPAKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAQYL 508
           QL+ +K    ++ ++++   ++ +  S C  KCI    ++  L K E  CL  CV ++L
Sbjct: 17  QLELSKFIESEQQKVKLQQAIH-QFTSTCWPKCIGNIGNK--LDKSEEQCLQNCVERFL 72


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
 Frame = -1

Query: 334 LRYCHLYVLTK*CSMVYLENYNEFKFTFP-IQ--VRVFSLIRSSHAFSC--FHILNTLSI 170
           LR C++ +    CS V L N  +  FTFP IQ  + +  +  S+   SC  F + ++ ++
Sbjct: 151 LRSCNISISN--CSSVNLHNATKCNFTFPTIQGSIHLSDINDSTICVSCHQFRLHHSTNL 208

Query: 169 NVVLR 155
            V LR
Sbjct: 209 RVHLR 213


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 565 GFPLGDIWEKFLTLCVHVRQ 506
           GF L  I  +F+ LCVH+R+
Sbjct: 45  GFSLEPIMMRFIELCVHLRK 64


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 150 WWRRTTLILSVLRI*KQENACEDLIKENTLTCI 248
           +W RT + L +L +     ACE ++K+  L  +
Sbjct: 226 FWERTYMFLELLPLQSITAACESILKDYLLNLV 258


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 595  RVCGPLVRIFGFPLGDIWEKFL-TLCVHVRQVLGY 494
            R+  PLVR+ G   GD+    + TLC  V Q LGY
Sbjct: 1009 RIIHPLVRMLGKSNGDLRAVIMDTLCAIVSQ-LGY 1042


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = +3

Query: 171 ILSVLRI*KQ--ENACEDLIKENTLTCI 248
           ++S  RI K   EN+CE +IKEN+L+ +
Sbjct: 730 LMSFTRILKAHLENSCEYVIKENSLSLL 757


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,686,452
Number of Sequences: 5004
Number of extensions: 54280
Number of successful extensions: 151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)