Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30735
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1396 - 26742694-26742915,26743736-26743771                       36   0.020
05_01_0085 - 568015-568204,568286-568365                               31   0.98 
07_01_0952 - 8005633-8005687,8006357-8006395,8006668-8006720,800...    29   3.0  
07_01_0422 + 3220988-3221536                                           29   3.0  
05_01_0167 - 1153778-1153927,1154006-1154797,1155602-1156408,115...    28   5.2  
03_06_0231 + 32522898-32523524                                         27   9.2  

>08_02_1396 - 26742694-26742915,26743736-26743771
          Length = 85

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +2

Query: 350 LQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAQYL 508
           + L QE +  M+S+M  +L S C  KCI       +   GE+ CL  C  ++L
Sbjct: 21  ITLQQEQQKAMVSEMVGKLTSVCWDKCI-TSTPGSKFSSGETTCLTNCAQRFL 72


>05_01_0085 - 568015-568204,568286-568365
          Length = 89

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +2

Query: 338 DPAKLQLVQE-LEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAQYLTY 514
           D A+++ V + L+      +YN +   C   C+   Y    LGK E  C+  CV ++L  
Sbjct: 11  DKARMEAVADKLQTRDAIRLYNWVSHRCFSDCVTTFYRRT-LGKKEEDCVRSCVRKFLLL 69

Query: 515 MNA 523
            +A
Sbjct: 70  SSA 72


>07_01_0952 -
           8005633-8005687,8006357-8006395,8006668-8006720,
           8007868-8007930
          Length = 69

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 314 VKMAVPQLDPAKLQL--VQELEIEMMSDMYNRLVSACHRKCI 433
           V +   Q++  K Q+  + E E+E   D++NRL   C  KCI
Sbjct: 8   VNVQKEQVNMQKEQMFGLAEKEMEYRVDLFNRLTQTCFSKCI 49


>07_01_0422 + 3220988-3221536
          Length = 182

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 431 CTSGDMRSPSGC-TCRTSS-QSPVPAPIAALQGLAAVLPS 318
           C    +R    C  CRTS   SP+P P+A +  LA V PS
Sbjct: 143 CVDPWLRQRPTCPVCRTSPLPSPMPTPLAEVTPLALVRPS 182


>05_01_0167 -
           1153778-1153927,1154006-1154797,1155602-1156408,
           1156514-1156618,1156985-1157059,1157160-1157233,
           1157388-1157450,1157549-1157647,1157704-1157811,
           1157908-1157973,1158073-1158150,1158257-1158304,
           1158381-1158440,1158527-1158610,1158902-1158949,
           1159049-1159096,1161462-1161579
          Length = 940

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 119 AITTASLSLFVVAKNYINTQRVENMKARERMRRSNQGEYPDLYRKCE 259
           A+  ++  L  + KNY  TQ  +  + R+ ++  N+G   D+  K E
Sbjct: 129 ALVQSNSGLAFLEKNYNTTQSYKMQENRDNIKSGNKGHLSDIGSKIE 175


>03_06_0231 + 32522898-32523524
          Length = 208

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -3

Query: 431 CTSGDMRSPSGC-TCRTSS-QSPVPAPIAALQGLAAVLPS 318
           C    +R    C  CRTS   SP+P P+A +  LA   PS
Sbjct: 169 CVDPWLRQHPTCPVCRTSPLPSPLPTPLAEVTPLAMARPS 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,882,104
Number of Sequences: 37544
Number of extensions: 337875
Number of successful extensions: 822
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)