Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30735
         (625 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55628| Best HMM Match : zf-Tim10_DDP (HMM E-Value=3.2e-27)          95   3e-20
SB_7773| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0024)             29   2.3  
SB_50720| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  

>SB_55628| Best HMM Match : zf-Tim10_DDP (HMM E-Value=3.2e-27)
          Length = 89

 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 44/68 (64%), Positives = 52/68 (76%)
 Frame = +2

Query: 335 LDPAKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAQYLTY 514
           +DPAK Q+V +LEIEMM+D+YNRL  AC +KCI  KY E +L KGESVCLDRCVA+YL  
Sbjct: 1   MDPAKAQMVADLEIEMMTDLYNRLTVACQKKCISPKYKEGDLTKGESVCLDRCVAKYLEI 60

Query: 515 MNA*GKKL 538
               GKKL
Sbjct: 61  HERIGKKL 68


>SB_7773| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0024)
          Length = 550

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 463 KRRICMFRSLCSPILDVHERIG*ETFPICHQGGNR 567
           K R+ + R L  P+L V    G   FP+CH+GG R
Sbjct: 291 KLRVLLPRDLFFPVLPVRVN-GKLMFPLCHRGGAR 324


>SB_50720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 433

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 113 WLAITTASLSLFVVAKNYINTQRVENMKARERMRRSNQGE 232
           +++I +  L LF++  NY+   RV   +AR R  RS + E
Sbjct: 228 FVSIASFFLPLFIILVNYLMIHRVARRRARARHLRSLKRE 267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,712,938
Number of Sequences: 59808
Number of extensions: 396541
Number of successful extensions: 814
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)