Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30735
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL161712-17|CAC70139.1|   86|Caenorhabditis elegans Hypothetical...    80   1e-15
AF150094-1|AAD40000.1|   86|Caenorhabditis elegans small zinc fi...    80   1e-15
AF036705-8|AAB95169.1|  685|Caenorhabditis elegans Hypothetical ...    28   4.7  
U70857-6|AAD31051.1|  189|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>AL161712-17|CAC70139.1|   86|Caenorhabditis elegans Hypothetical
           protein Y66D12A.22 protein.
          Length = 86

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 36/65 (55%), Positives = 46/65 (70%)
 Frame = +2

Query: 344 AKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAQYLTYMNA 523
           A++  V ELE+EMMSDMY R+ ++C  KCI   + E EL KGE+VCLDRCVA+YL     
Sbjct: 5   AQMAQVAELEVEMMSDMYRRMTNSCQAKCIATAFRESELTKGEAVCLDRCVAKYLDVHEK 64

Query: 524 *GKKL 538
            GK+L
Sbjct: 65  LGKRL 69


>AF150094-1|AAD40000.1|   86|Caenorhabditis elegans small zinc
           finger-like protein protein.
          Length = 86

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 36/65 (55%), Positives = 46/65 (70%)
 Frame = +2

Query: 344 AKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAQYLTYMNA 523
           A++  V ELE+EMMSDMY R+ ++C  KCI   + E EL KGE+VCLDRCVA+YL     
Sbjct: 5   AQMAQVAELEVEMMSDMYRRMTNSCQAKCIATAFRESELTKGEAVCLDRCVAKYLDVHEK 64

Query: 524 *GKKL 538
            GK+L
Sbjct: 65  LGKRL 69


>AF036705-8|AAB95169.1|  685|Caenorhabditis elegans Hypothetical
           protein F37C4.3 protein.
          Length = 685

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 338 DPAKL--QLVQELEIEMMSDMYNRLVSACHRKCIPIKY 445
           DP  L  QLV   E EM    Y +L   C+ KC+ + Y
Sbjct: 600 DPVILDKQLVDFSEYEMARKRYAQLFQDCNEKCVRVDY 637


>U70857-6|AAD31051.1|  189|Caenorhabditis elegans Hypothetical
           protein C10G8.3 protein.
          Length = 189

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
 Frame = +2

Query: 413 ACHRKCIPIKYHE-------PELGKGESVCLDRCVAQYLTYMN 520
           AC+ +C+P+ +H+        +  KG++VC D C      Y N
Sbjct: 77  ACYEECLPLDHHKCPAASKIHKTTKGKTVCNDDCDCDAGNYCN 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,680,482
Number of Sequences: 27780
Number of extensions: 300894
Number of successful extensions: 669
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)