Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30735
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   4.2  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   5.6  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 306 LSNVQWYIWKIIMNS 262
           LS+  W+ W +++NS
Sbjct: 610 LSSAVWFAWGVLLNS 624


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -1

Query: 298 CSMVYLENYNEFKFTFPIQVRVFSLIRSSHAFS 200
           C  V+LE   + KF  P+Q  V   I    A S
Sbjct: 189 CFQVFLEGSQKRKFNVPLQPVVSDPIFDKKAMS 221


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -1

Query: 298 CSMVYLENYNEFKFTFPIQVRVFSLIRSSHAFS 200
           C  V+LE   + KF  P+Q  V   I    A S
Sbjct: 189 CFQVFLEGSQKRKFNVPLQPVVSDPIFDKKAMS 221


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 213 EDLIKENTLTC 245
           + L+KENT+TC
Sbjct: 380 QSLLKENTVTC 390


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,048
Number of Sequences: 438
Number of extensions: 3940
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)