Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30735
         (625 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29530.1 68415.m03587 mitochondrial import inner membrane tra...    53   1e-07
At3g46560.1 68416.m05054 mitochondrial import inner membrane tra...    40   0.001
At5g50810.1 68418.m06295 mitochondrial import inner membrane tra...    36   0.017
At1g50720.1 68414.m05703 stigma-specific Stig1 family protein si...    29   1.9  
At1g17710.1 68414.m02192 expressed protein                             29   1.9  
At1g63750.1 68414.m07214 disease resistance protein (TIR-NBS-LRR...    28   4.4  
At5g66850.1 68418.m08428 protein kinase family protein contains ...    28   5.8  
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR...    27   7.7  

>At2g29530.1 68415.m03587 mitochondrial import inner membrane
           translocase (TIM10) identical to mitochondrial import
           inner membrane translocase subunit Tim10 [Arabidopsis
           thaliana] Swiss-Prot:Q9ZW33; contains Pfam domain,
           PF02953: Tim10/DDP family zinc finger
          Length = 83

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 19/47 (40%), Positives = 31/47 (65%)
 Frame = +2

Query: 365 ELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAQY 505
           + E+E   +++N+L   C  KC+  +Y E EL  GE+ C+DRCV++Y
Sbjct: 19  QTEMEYRVELFNKLAQTCFNKCVDKRYKEAELNMGENSCIDRCVSKY 65


>At3g46560.1 68416.m05054 mitochondrial import inner membrane
           translocase (TIM9) identical to mitochondrial import
           inner membrane translocase subunit Tim9 [Arabidopsis
           thaliana] Swiss-Prot:Q9XGX9; contains Pfam domain,
           PF02953: Tim10/DDP family zinc finger
          Length = 93

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = +2

Query: 326 VPQLDPAKL-QLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAQ 502
           +P+ D AK+  ++ +L++     MYN LV  C   C+   +    L K E  C+ RC  +
Sbjct: 12  LPEEDKAKMASMIDQLQLRDSLRMYNSLVERCFVDCVD-SFTRKSLQKQEETCVMRCAEK 70

Query: 503 YLTYMNA*GKKLFPYVTKGETED 571
           +L +    G +         T+D
Sbjct: 71  FLKHTMRVGMRFAELNQNAPTQD 93


>At5g50810.1 68418.m06295 mitochondrial import inner membrane
           translocase (TIM8) identical to mitochondrial import
           inner membrane translocase subunit Tim8 [Arabidopsis
           thaliana] Swiss-Prot:Q9XGY4; contains Pfam domain,
           PF02953: Tim10/DDP family zinc finger
          Length = 77

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 338 DPAKLQ-LVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAQYL 508
           +P  LQ L QE E  M+++M +++ S C  KCI       +    ES CL  C  +Y+
Sbjct: 8   NPELLQFLAQEKERAMVNEMVSKMTSVCWDKCI-TSAPGSKFSSSESSCLTHCAQRYM 64


>At1g50720.1 68414.m05703 stigma-specific Stig1 family protein
           similar to stigma-specific protein STIG1 [Nicotiana
           tabacum] GI:496647; contains Pfam profile PF04885:
           Stigma-specific protein, Stig1
          Length = 154

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 362 QELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVC 481
           +E EI     MYN  ++ C  KC+ + Y     G  ++ C
Sbjct: 73  KEEEICKSQGMYNSTMACCSNKCVDLAYDNDNCGACKNQC 112


>At1g17710.1 68414.m02192 expressed protein
          Length = 275

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 283 LENYNEFKFTFPIQVRVFSLIRSSHAFSCFHILNTLSINVVLRH 152
           +E   +     PI  RV   I+S+HA       NTL I  ++ H
Sbjct: 63  IEEIKQVLRRIPIHPRVIPAIKSAHALGIVSDANTLFIETIIEH 106


>At1g63750.1 68414.m07214 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1131

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +2

Query: 104 TFRWLAITTASLSLFVVAKNYINTQRVENMKARERMRRSNQGEYPDLYRKCELEFIII 277
           TF    +   ++   +V K +  TQ ++N+K  +     N  E PDL     LE+  +
Sbjct: 603 TFNLECLVELNMRESLVEKLWEGTQHLKNLKYMDLTESKNLKELPDLSNATNLEYFYL 660


>At5g66850.1 68418.m08428 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain; identical
           to cDNA MAP3K gamma protein kinase GI:2315152
          Length = 716

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 431 CTSGDMRSPSGCTCRTSSQSPVPAPIAALQ 342
           C    +  P G TC +SS + VP+P A L+
Sbjct: 307 CNVHPLPLPPGATCSSSSAASVPSPQAPLK 336


>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
           class), putative similar to zinc finger protein
           (GI:15811367) [Arabidopsis thaliana]; similar to
           TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana];
           similar to disease resistance protein RPP1-WsB
           (GI:3860165) [Arabidopsis thaliana]
          Length = 1996

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +2

Query: 110 RWLAITTASLSLFVVAKNYINTQRVENMKARERMRRSNQGEYPDLYRKCELE 265
           RW A     +    + K +  TQ + N+K  +  R S+  E PDL     LE
Sbjct: 543 RWEAYPKLDMKESQLEKLWQGTQPLTNLKKMDLTRSSHLKELPDLSNATNLE 594


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,833,163
Number of Sequences: 28952
Number of extensions: 280459
Number of successful extensions: 647
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)